Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000495.1-P | |
| Bra011972.1-P | |
| Bra034392.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56980.1 | Bra000495.1-P | AT2G28160.1 | 18268542 |
| AT3G56980.1 | Bra011972.1-P | AT2G28160.1 | 18268542 |
| AT3G56980.1 | Bra034392.1-P | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06147 | Canola | nucleus | 100.0 | 100.0 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 71.31 | 72.76 |
| Bra007290.1-P | Field mustard | nucleus | 72.11 | 72.69 |
| Bra007289.1-P | Field mustard | nucleus | 69.72 | 70.28 |
| Bra014970.1-P | Field mustard | nucleus | 69.32 | 70.16 |
| Bra003260.1-P | Field mustard | nucleus | 67.33 | 67.87 |
| Bra003261.1-P | Field mustard | mitochondrion | 48.21 | 65.76 |
| Bra014657.1-P | Field mustard | nucleus | 65.34 | 65.34 |
| Bra014658.1-P | Field mustard | nucleus | 64.14 | 64.92 |
| Bra014659.1-P | Field mustard | nucleus | 66.14 | 64.84 |
| AT3G56980.1 | Thale cress | nucleus | 64.14 | 62.4 |
| Bra014654.1-P | Field mustard | nucleus | 62.15 | 62.15 |
| Bra016946.1-P | Field mustard | nucleus | 47.41 | 50.0 |
| Bra004609.1-P | Field mustard | nucleus | 47.01 | 48.56 |
| Bra014653.1-P | Field mustard | cytosol | 42.23 | 47.32 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 33.07 | 36.89 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 35.46 | 36.33 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 16.33 | 35.04 |
| PGSC0003DMT400076759 | Potato | nucleus | 25.1 | 35.0 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 31.87 | 33.2 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 31.87 | 33.2 |
| Solyc10g079680.1.1 | Tomato | nucleus | 25.1 | 32.64 |
| KRH66814 | Soybean | nucleus | 31.08 | 32.37 |
| Zm00001d042062_P001 | Maize | nucleus | 27.09 | 30.63 |
| Zm00001d011847_P001 | Maize | nucleus | 26.69 | 29.26 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 28.69 | 28.46 |
| KXG34133 | Sorghum | nucleus | 27.49 | 28.28 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 28.29 | 28.06 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 27.09 | 27.87 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 23.11 | 27.75 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 27.89 | 27.67 |
| Os01t0952800-01 | Rice | nucleus | 27.09 | 27.53 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 27.09 | 27.2 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 25.9 | 27.08 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 26.29 | 26.72 |
| PGSC0003DMT400076775 | Potato | cytosol | 11.16 | 26.67 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 25.1 | 26.47 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 25.9 | 26.42 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 25.9 | 26.32 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 25.9 | 26.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.5 | 25.91 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 24.3 | 25.63 |
| Solyc10g079650.1.1 | Tomato | nucleus | 25.5 | 25.6 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 23.51 | 25.43 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 23.51 | 25.43 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 24.7 | 25.31 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 23.9 | 25.21 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 23.9 | 25.0 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 24.7 | 24.9 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 24.3 | 24.9 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 25.1 | 24.8 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 23.11 | 24.79 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 23.9 | 24.49 |
| Solyc10g079660.1.1 | Tomato | nucleus | 28.69 | 10.33 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra041013 | EnsemblPlants:Bra041013.1 |
| EnsemblPlants:Bra041013.1-P | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M4FIT4 |
| InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000253EBBC | InterPro:bHLH_dom | : | : | : |
Description
AT3G56970 (E=1e-084) BHLH038, ORG2 | BHLH038; DNA binding / transcription factor
Coordinates
chrScaffold000378:+:15260..16736
Molecular Weight (calculated)
28928.7 Da
IEP (calculated)
9.018
GRAVY (calculated)
-0.348
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MHALGHTFFP NFGRESTGVY ESYNIVRDNH NNGTFLDFPV PNMYGVVHHQ TSLVDSVSSE VNGIDSNSVV MKKLNHNANE RNRRKKINSL FTSLRSCLPD
101: LDELKKLSIP KTVSRSVQYI TELKKQANKL RQKKDDLLVR VLVQKERYVQ PQPKVIAGYV STVFATKLRD NEVMVQISSS KIHNFFIYNV LCGLEEDGFL
201: IVDVSFLSSQ GERIFYTLHL QLDTFDNYKL ICEELSQRIL YLYEKCGYSS K
101: LDELKKLSIP KTVSRSVQYI TELKKQANKL RQKKDDLLVR VLVQKERYVQ PQPKVIAGYV STVFATKLRD NEVMVQISSS KIHNFFIYNV LCGLEEDGFL
201: IVDVSFLSSQ GERIFYTLHL QLDTFDNYKL ICEELSQRIL YLYEKCGYSS K
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.