Factsheet for Bra007289.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra011972.1-P
Bra034392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	Bra000495.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra011972.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra034392.1-P	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06149	Canola	nucleus	100.0	100.0
Bra014971.1-P	Field mustard	cytosol, nucleus, plastid	75.9	76.83
Bra007290.1-P	Field mustard	nucleus	75.5	75.5
Bra014970.1-P	Field mustard	nucleus	70.68	70.97
Bra003260.1-P	Field mustard	nucleus	70.68	70.68
Bra003261.1-P	Field mustard	mitochondrion	52.21	70.65
Bra041013.1-P	Field mustard	nucleus	70.28	69.72
Bra014657.1-P	Field mustard	nucleus	69.48	68.92
Bra014659.1-P	Field mustard	nucleus	69.48	67.58
AT3G56980.1	Thale cress	nucleus	69.08	66.67
Bra014658.1-P	Field mustard	nucleus	65.86	66.13
Bra014654.1-P	Field mustard	nucleus	65.86	65.34
Bra016946.1-P	Field mustard	nucleus	48.59	50.84
Bra014653.1-P	Field mustard	cytosol	44.58	49.55
Bra004609.1-P	Field mustard	nucleus	48.19	49.38
KRG95137	Soybean	cytosol, nucleus, plastid	17.67	37.61
VIT_13s0047g00450.t01	Wine grape	nucleus	32.93	36.44
VIT_08s0007g05300.t01	Wine grape	nucleus	35.74	36.33
PGSC0003DMT400076759	Potato	nucleus	25.3	35.0
KRH66814	Soybean	nucleus	33.33	34.44
KRH66812	Soybean	cytosol, nucleus, plastid	32.93	34.02
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	32.13	33.2
Solyc10g079680.1.1	Tomato	nucleus	25.7	33.16
GSMUA_Achr8P22120_001	Banana	nucleus	28.11	29.17
Zm00001d011847_P001	Maize	nucleus	25.7	27.95
Zm00001d042062_P001	Maize	nucleus	24.9	27.93
TraesCS2D01G517000.1	Wheat	nucleus	28.11	27.67
Solyc10g079650.1.1	Tomato	nucleus	27.71	27.6
HORVU2Hr1G114070.1	Barley	nucleus	27.71	27.27
TraesCS3B01G549700.1	Wheat	nucleus	22.89	27.27
TraesCS2A01G515300.1	Wheat	nucleus	27.71	27.27
TraesCS2B01G543800.1	Wheat	nucleus	27.31	27.2
GSMUA_AchrUn_...	Banana	nucleus	26.91	27.13
PGSC0003DMT400076775	Potato	cytosol	11.24	26.67
TraesCS2B01G543700.1	Wheat	nucleus	25.7	26.23
KXG34133	Sorghum	nucleus	25.3	25.82
TraesCS3A01G489400.1	Wheat	nucleus	23.69	25.43
HORVU3Hr1G108660.1	Barley	nucleus	23.29	25.0
TraesCS3D01G495400.1	Wheat	nucleus	23.69	24.79
TraesCS3B01G550200.2	Wheat	nucleus	24.5	24.7
TraesCS3D01G495700.1	Wheat	nucleus	24.5	24.7
TraesCS3B01G549800.1	Wheat	nucleus	23.29	24.37
TraesCS3D01G495300.1	Wheat	nucleus	22.89	24.36
TraesCS3A01G489700.1	Wheat	nucleus	24.1	24.29
Os01t0952800-01	Rice	nucleus	24.1	24.29
TraesCS7B01G321400.1	Wheat	nucleus	24.1	24.1
TraesCS3A01G489600.1	Wheat	nucleus	23.69	24.08
TraesCS3D01G495600.1	Wheat	nucleus	23.69	24.08
HORVU3Hr1G108680.1	Barley	nucleus	23.69	23.98
TraesCS3A01G489500.1	Wheat	nucleus	22.89	23.95
HORVU3Hr1G108670.2	Barley	nucleus	22.89	23.75
TraesCS3B01G550000.1	Wheat	nucleus	23.29	23.67
TraesCS7A01G421000.1	Wheat	nucleus	23.69	23.23
Solyc10g079660.1.1	Tomato	nucleus	30.52	10.9

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra007289	EnsemblPlants:Bra007289.1
EnsemblPlants:Bra007289.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CSU7
InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002542C1D	InterPro:bHLH_dom	:	:	:

Description

AT3G56980 (E=2e-088) BHLH039, ORG3 | BHLH039; DNA binding / transcription factor

Coordinates

chrA09:-:28394713..28395582

Molecular Weight (calculated)

28262.6 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.357

Length

249 amino acids

Sequence
(BLAST)

001: MHALGSLLFP NSGWAPTGEC ESYKLVRDNN DSFLDFPVPK TYGVLHHQTS LGVPVLSEVN GLNNNSVVIK KLNHNANERN RRQKANALFS SLRLCLPRSY
101: QSKKLSNPET VSRSVLYIPE LQEEVKKLIQ KKEDLLVRVS DQREHYVKPE PKVAASYFST VFATNLVDNK VTVQISSSKI HNFSIYNVLN GLEEDGFVIV
201: DVSSSSSQGE WLFYTLHLQV DKIDSYKLVC EDLSQRVLYL YEKCGNSFK

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.