Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76026 | Canola | nucleus | 76.36 | 79.44 |
| AT3G56970.1 | Thale cress | nucleus | 77.52 | 79.05 |
| Bra014658.1-P | Field mustard | nucleus | 75.97 | 79.03 |
| Bra014657.1-P | Field mustard | nucleus | 76.36 | 78.49 |
| CDY47395 | Canola | nucleus | 67.05 | 78.28 |
| CDY69684 | Canola | nucleus | 74.42 | 76.49 |
| CDY68089 | Canola | nucleus | 74.42 | 76.49 |
| Bra014654.1-P | Field mustard | nucleus | 73.26 | 75.3 |
| CDX76031 | Canola | nucleus | 73.26 | 75.3 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 68.22 | 71.54 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 68.22 | 71.54 |
| Bra003261.1-P | Field mustard | mitochondrion | 50.78 | 71.2 |
| CDX85121 | Canola | nucleus | 67.44 | 70.73 |
| CDX72086 | Canola | nucleus | 63.57 | 69.49 |
| CDY71388 | Canola | cytosol | 67.44 | 69.32 |
| Bra007289.1-P | Field mustard | nucleus | 66.67 | 69.08 |
| Bra003260.1-P | Field mustard | nucleus | 66.67 | 69.08 |
| CDY06149 | Canola | nucleus | 66.67 | 69.08 |
| Bra007290.1-P | Field mustard | nucleus | 66.67 | 69.08 |
| CDY71118 | Canola | nucleus | 66.28 | 68.95 |
| CDX67671 | Canola | nucleus | 66.28 | 68.67 |
| CDY06148 | Canola | nucleus | 66.28 | 68.67 |
| CDX77490 | Canola | nucleus | 65.5 | 68.15 |
| CDX67670 | Canola | nucleus | 65.5 | 67.87 |
| Bra014970.1-P | Field mustard | nucleus | 65.12 | 67.74 |
| CDX72085 | Canola | nucleus | 64.34 | 66.14 |
| CDY06147 | Canola | nucleus | 62.4 | 64.14 |
| Bra041013.1-P | Field mustard | nucleus | 62.4 | 64.14 |
| CDX76027 | Canola | nucleus | 56.59 | 63.48 |
| CDY47396 | Canola | mitochondrion | 65.89 | 57.63 |
| AT2G41240.1 | Thale cress | nucleus | 53.1 | 56.61 |
| CDX76032 | Canola | cytosol | 48.06 | 55.36 |
| Bra014653.1-P | Field mustard | cytosol | 48.06 | 55.36 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 39.53 | 45.33 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 20.54 | 45.3 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 42.25 | 44.49 |
| KRH66814 | Soybean | nucleus | 41.09 | 43.98 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 39.15 | 41.91 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 39.15 | 41.91 |
| PGSC0003DMT400076759 | Potato | nucleus | 25.19 | 36.11 |
| AT5G04150.1 | Thale cress | nucleus | 34.5 | 34.23 |
| Solyc10g079680.1.1 | Tomato | nucleus | 25.58 | 34.2 |
| Zm00001d042062_P001 | Maize | nucleus | 28.68 | 33.33 |
| Zm00001d011847_P001 | Maize | nucleus | 29.07 | 32.75 |
| Solyc10g079650.1.1 | Tomato | nucleus | 31.4 | 32.4 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 29.84 | 32.08 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 30.23 | 31.58 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 29.84 | 31.56 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 25.19 | 31.1 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 29.84 | 30.8 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 29.46 | 30.77 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 28.29 | 30.67 |
| PGSC0003DMT400076775 | Potato | cytosol | 12.4 | 30.48 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 29.84 | 30.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.07 | 30.36 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 29.07 | 30.36 |
| Os01t0952800-01 | Rice | nucleus | 28.68 | 29.96 |
| KXG34133 | Sorghum | nucleus | 28.29 | 29.92 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 27.52 | 29.83 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 27.52 | 29.83 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 28.29 | 29.8 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 28.68 | 29.72 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 28.29 | 29.67 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 29.07 | 29.64 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 29.07 | 29.64 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 27.52 | 29.58 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 27.52 | 28.98 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 27.52 | 28.98 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 25.58 | 28.45 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 25.58 | 28.45 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 27.52 | 27.95 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 25.19 | 27.78 |
| Solyc10g079660.1.1 | Tomato | nucleus | 37.21 | 13.77 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | EntrezGene:824865 | ProteinID:AEE79595.1 |
| EMBL:AF488577 | ArrayExpress:AT3G56980 | EnsemblPlantsGene:AT3G56980 | RefSeq:AT3G56980 | TAIR:AT3G56980 | RefSeq:AT3G56980-TAIR-G |
| EnsemblPlants:AT3G56980.1 | TAIR:AT3G56980.1 | Symbol:BHLH039 | ProteinID:CAB72168.1 | ncoils:Coil | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010106 | GO:GO:0019725 |
| GO:GO:0046983 | GO:GO:0055072 | GO:GO:0090575 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| InterPro:MASH1/Ascl1a-like | RefSeq:NP_191257.1 | PFAM:PF00010 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009015 |
| PO:PO:0009025 | PO:PO:0020038 | PO:PO:0025022 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 |
| UniProt:Q9M1K0 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000009E6E1 | InterPro:bHLH_dom | SEG:seg |
Description
ORG3Transcription factor ORG3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K0]
Coordinates
chr3:-:21086390..21087710
Molecular Weight (calculated)
29005.4 Da
IEP (calculated)
6.913
GRAVY (calculated)
-0.385
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MCALVPPLFP NFGWPSTGEY DSYYLAGDIL NNGGFLDFPV PEETYGAVTA VTQHQNSFGV SVSSEGNEID NNPVVVKKLN HNASERDRRR KINSLFSSLR
101: SCLPASGQSK KLSIPATVSR SLKYIPELQE QVKKLIKKKE ELLVQISGQR NTECYVKQPP KAVANYISTV SATRLGDNEV MVQISSSKIH NFSISNVLSG
201: LEEDRFVLVD MSSSRSQGER LFYTLHLQVE KIENYKLNCE ELSQRMLYLY EECGNSYI
101: SCLPASGQSK KLSIPATVSR SLKYIPELQE QVKKLIKKKE ELLVQISGQR NTECYVKQPP KAVANYISTV SATRLGDNEV MVQISSSKIH NFSISNVLSG
201: LEEDRFVLVD MSSSRSQGER LFYTLHLQVE KIENYKLNCE ELSQRMLYLY EECGNSYI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.