CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76026	Canola	nucleus	93.67	83.47
CDX76031	Canola	nucleus	78.28	68.92
CDY68089	Canola	nucleus	76.47	67.33
CDY47394	Canola	nucleus	77.38	67.06
AT3G56980.1	Thale cress	nucleus	78.28	67.05
CDY69684	Canola	nucleus	76.02	66.93
CDY47392	Canola	nucleus	77.38	66.8
CDX76025	Canola	nucleus	77.38	66.8
CDX77489	Canola	cytosol, nucleus, plastid	69.23	62.2
CDX85121	Canola	nucleus	68.33	61.38
CDX76023	Canola	cytosol	7.69	60.71
CDY06148	Canola	nucleus	66.97	59.44
CDY71388	Canola	cytosol	66.97	58.96
CDY71118	Canola	nucleus	65.61	58.47
CDX77490	Canola	nucleus	65.16	58.06
CDY06149	Canola	nucleus	65.16	57.83
CDX72086	Canola	nucleus	61.54	57.63
CDX67671	Canola	nucleus	64.25	57.03
CDX72085	Canola	nucleus	64.71	56.97
CDX67670	Canola	nucleus	63.35	56.22
CDY06147	Canola	nucleus	62.44	54.98
CDX76027	Canola	nucleus	54.75	52.61
CDY47396	Canola	mitochondrion	64.71	48.47
CDY14758	Canola	nucleus	51.58	47.9
CDY06938	Canola	nucleus	51.58	47.9
CDX97997	Canola	nucleus	52.04	47.33
CDY72354	Canola	nucleus	52.04	47.33
CDX76032	Canola	cytosol	44.8	44.2
KRG95137	Soybean	cytosol, nucleus, plastid	22.62	42.73
CDY23861	Canola	cytosol, plastid	26.24	41.43
VIT_13s0047g00450.t01	Wine grape	nucleus	38.91	38.22
VIT_08s0007g05300.t01	Wine grape	nucleus	40.27	36.33
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	38.91	35.68
KRH66814	Soybean	nucleus	38.91	35.68
KRH66812	Soybean	cytosol, nucleus, plastid	38.01	34.85
PGSC0003DMT400076759	Potato	nucleus	24.89	30.56
PGSC0003DMT400076775	Potato	cytosol	14.03	29.52
Solyc10g079680.1.1	Tomato	nucleus	24.89	28.5
Solyc10g079650.1.1	Tomato	nucleus	32.13	28.4
Zm00001d042062_P001	Maize	nucleus	28.51	28.38
GSMUA_AchrUn_...	Banana	nucleus	31.22	27.94
GSMUA_Achr8P22120_001	Banana	nucleus	29.86	27.5
Zm00001d011847_P001	Maize	nucleus	28.05	27.07
TraesCS3B01G550200.2	Wheat	nucleus	29.86	26.72
TraesCS3A01G489700.1	Wheat	nucleus	28.96	25.91
TraesCS3B01G549700.1	Wheat	nucleus	24.43	25.84
TraesCS3D01G495600.1	Wheat	nucleus	28.51	25.71
TraesCS3D01G495700.1	Wheat	nucleus	28.51	25.51
KXG34133	Sorghum	nucleus	28.05	25.41
TraesCS3B01G550000.1	Wheat	nucleus	28.05	25.31
TraesCS3D01G495400.1	Wheat	nucleus	27.15	25.21
HORVU3Hr1G108680.1	Barley	nucleus	28.05	25.2
TraesCS2B01G543800.1	Wheat	nucleus	28.51	25.2
TraesCS2B01G543700.1	Wheat	nucleus	27.6	25.0
TraesCS2A01G515300.1	Wheat	nucleus	28.51	24.9
TraesCS3A01G489600.1	Wheat	nucleus	27.6	24.9
TraesCS3A01G489500.1	Wheat	nucleus	26.7	24.79
TraesCS3B01G549800.1	Wheat	nucleus	26.7	24.79
Os01t0952800-01	Rice	nucleus	27.6	24.7
HORVU3Hr1G108670.2	Barley	nucleus	26.7	24.58
TraesCS2D01G517000.1	Wheat	nucleus	28.05	24.51
HORVU2Hr1G114070.1	Barley	nucleus	28.05	24.51
TraesCS7B01G321400.1	Wheat	nucleus	27.15	24.1
TraesCS3A01G489400.1	Wheat	nucleus	24.89	23.71
TraesCS3D01G495300.1	Wheat	nucleus	24.89	23.5
HORVU3Hr1G108660.1	Barley	nucleus	24.43	23.28
TraesCS7A01G421000.1	Wheat	nucleus	26.7	23.23
CDX80905	Canola	nucleus	34.39	19.54
Solyc10g079660.1.1	Tomato	nucleus	37.1	11.76

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078I8Y5	UniProt:A0A078I8Y5
EnsemblPlants:CDY47395	ProteinID:CDY47395	ProteinID:CDY47395.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00087296001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935
PANTHER:PTHR13935:SF41	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EC8DEC	InterPro:bHLH_dom	SEG:seg

Description

BnaC04g24680DBnaC04g24680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8Y5]

Coordinates

chrLK032713:-:134600..135437

Molecular Weight (calculated)

25060.9 Da

IEP (calculated)

6.662

GRAVY (calculated)

-0.365

Length

221 amino acids

Sequence
(BLAST)

001: MCALVPPFFP NFGWPSTGEY ESYYLAGENL DNCTFFYFPV PETYRVVHQR NSLGVSISSA GTGIDNSPVV NKKLKHNASE RDRRKKINSL FSSLCSCLPA
101: SDQSKKLSIP QTVSRSLKHI LELQEEVKKL IQKKEELLLR VSGQRAIEQQ PKIHNFSISN VLSGLEEDGI VLVDVSLSRS QGERVFYTLH LQVDNIDNDK
201: LNCTELSQMM LYLYEECGNS Y

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.