CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67670
CDX67671
CDX71377
CDX72085
CDX72086
CDX76025
CDX76026
CDX76027
CDX76031
CDX76032
CDX77160
CDX77489
CDX77490
CDX83286
CDX85121
CDY04543
CDY06147
CDY06148
CDY06149
CDY30505
CDY31199
CDY47392
CDY47394
CDY47395
CDY47396
CDY68089
CDY69684
CDY71118
CDY71388

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28160.1	CDX71377	AT2G28160.1	18268542
AT2G28160.1	CDX77160	AT2G28160.1	18268542
AT2G28160.1	CDX83286	AT2G28160.1	18268542
AT2G28160.1	CDY04543	AT2G28160.1	18268542
AT2G28160.1	CDY30505	AT2G28160.1	18268542
AT2G28160.1	CDY31199	AT2G28160.1	18268542
AT2G28160.1	CDX76025	AT3G56970.1	18268542
AT2G28160.1	CDY47392	AT3G56970.1	18268542
AT2G28160.1	CDY47394	AT3G56970.1	18268542
AT2G28160.1	CDX67670	AT3G56980.1	18268542
AT2G28160.1	CDX67671	AT3G56980.1	18268542
AT2G28160.1	CDX72085	AT3G56980.1	18268542
AT2G28160.1	CDX72086	AT3G56980.1	18268542
AT2G28160.1	CDX76026	AT3G56980.1	18268542
AT2G28160.1	CDX76027	AT3G56980.1	18268542
AT2G28160.1	CDX76031	AT3G56980.1	18268542
AT2G28160.1	CDX76032	AT3G56980.1	18268542
AT2G28160.1	CDX77489	AT3G56980.1	18268542
AT2G28160.1	CDX77490	AT3G56980.1	18268542
AT2G28160.1	CDX85121	AT3G56980.1	18268542
AT2G28160.1	CDY06147	AT3G56980.1	18268542
AT2G28160.1	CDY06148	AT3G56980.1	18268542
AT2G28160.1	CDY06149	AT3G56980.1	18268542
AT2G28160.1	CDY47395	AT3G56980.1	18268542
AT2G28160.1	CDY47396	AT3G56980.1	18268542
AT2G28160.1	CDY68089	AT3G56980.1	18268542
AT2G28160.1	CDY69684	AT3G56980.1	18268542
AT2G28160.1	CDY71118	AT3G56980.1	18268542
AT2G28160.1	CDY71388	AT3G56980.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034392.1-P	Field mustard	nucleus	99.36	98.73
CDX77160	Canola	nucleus	99.04	98.42
AT2G28160.1	Thale cress	nucleus	85.67	84.59
CDY04543	Canola	nucleus	84.08	83.54
CDX71377	Canola	nucleus	82.48	81.96
CDY31199	Canola	nucleus	80.25	80.51
CDX83286	Canola	nucleus	79.94	80.19
KRH22827	Soybean	nucleus	52.87	51.39
VIT_06s0061g00720.t01	Wine grape	nucleus	49.36	49.36
KRH25108	Soybean	nucleus	43.95	48.42
KRH26533	Soybean	nucleus	49.36	48.14
KRH30560	Soybean	nucleus	46.82	47.12
Solyc06g051550.2.1	Tomato	cytosol	43.31	44.74
PGSC0003DMT400048941	Potato	nucleus	43.63	43.91
GSMUA_Achr6P27600_001	Banana	nucleus	29.94	30.92
HORVU2Hr1G068960.2	Barley	nucleus	26.75	27.45
TraesCS2A01G281200.1	Wheat	nucleus	28.98	26.92
TraesCS2D01G280100.1	Wheat	nucleus	28.66	26.55
TraesCS2B01G298600.1	Wheat	nucleus	28.98	26.53
CDX98033	Canola	nucleus	15.61	26.49
KXG26070	Sorghum	nucleus	30.57	26.23
Zm00001d004007_P001	Maize	nucleus	29.62	25.98
CDY19416	Canola	nucleus	15.29	25.95
CDY43542	Canola	nucleus	21.66	25.86
CDY42237	Canola	nucleus	19.75	25.62
CDY38270	Canola	nucleus	20.06	25.61
CDY30182	Canola	nucleus	19.75	25.41
Os04t0381700-00	Rice	nucleus	28.34	25.28
CDY47924	Canola	nucleus	19.75	25.2
CDX68608	Canola	nucleus	21.02	25.1
CDY46719	Canola	nucleus	21.02	25.0
CDX88610	Canola	nucleus	19.43	24.8
Zm00001d025205_P001	Maize	nucleus	29.62	24.41
CDY11882	Canola	nucleus	19.11	24.39
CDY52738	Canola	cytosol	12.42	23.64
CDY03557	Canola	cytosol, nucleus, plastid	9.87	19.62
CDX97027	Canola	nucleus	17.83	18.79
CDX69821	Canola	nucleus	17.83	18.48
CDX97028	Canola	cytosol, plastid, vacuole	5.1	16.0
CDY69978	Canola	nucleus	18.15	15.92
CDY37835	Canola	nucleus	17.83	15.64
CDX99537	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	9.87	15.35
CDY08769	Canola	nucleus	17.2	15.04
CDY21073	Canola	nucleus	18.79	13.69
CDY54227	Canola	nucleus	16.24	13.42
CDY34601	Canola	nucleus	18.79	13.29
CDY28529	Canola	nucleus	18.47	13.21
CDY34878	Canola	cytosol	15.61	12.76
CDX93399	Canola	nucleus	16.56	12.68
CDY37964	Canola	nucleus	16.24	12.56
CDY31399	Canola	nucleus	22.29	12.35
CDX71316	Canola	nucleus	22.29	12.32
CDY02227	Canola	nucleus	21.66	11.97
CDX89760	Canola	nucleus	21.66	11.97
CDY48974	Canola	nucleus	18.15	11.9

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.5	Gene3D:4.10.280.10	GO:A0A078GVH7	UniProt:A0A078GVH7	EnsemblPlants:CDY30505
ProteinID:CDY30505	ProteinID:CDY30505.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00045220001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF17	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDE115
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaA04g16280DBnaA04g16280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVH7]

Coordinates

chrLK032254:-:126324..127932

Molecular Weight (calculated)

35035.9 Da

IEP (calculated)

4.426

GRAVY (calculated)

-0.494

Length

314 amino acids

Sequence
(BLAST)

001: MDGRVNALSN LNDLEVYNFL VDPNFDQFIN FIRGDDQAIE NPPLDFDLGG RPLQNNSCFI DQNQFVPTPV VDLFNELPDL GSHVTESFHS FEGESVKPCG
101: DDDDYNDGDD SSATTTNNDG SRKTKTDRSR TLISERRRRS RMKDKLYALR SLVPNITKMD KASIVGDAVL YVQELQSQAK KLKADIAGLE ASLNSTGGYQ
201: EPAPDATQTF QSIKSPSKNI IEMDVIQVEE KGFYVRLVCN KGVGVAPSLY KSLESLRSFQ VQNSNLSSPS PDRYLLTYAL DGTCFEQSLN LPNLKLWITG
301: SLLNQGFEFL EPFT

Best Arabidopsis Sequence Match ( AT2G28160.1 )
(BLAST)

001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT

Arabidopsis Description

FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.