Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88610 | Canola | nucleus | 94.72 | 94.72 |
| CDY38270 | Canola | nucleus | 87.4 | 87.4 |
| CDY47924 | Canola | nucleus | 86.99 | 86.99 |
| CDY42237 | Canola | nucleus | 85.37 | 86.78 |
| CDY52738 | Canola | cytosol | 57.72 | 86.06 |
| AT5G57150.4 | Thale cress | nucleus | 78.86 | 73.48 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 60.98 | 61.48 |
| KRH37338 | Soybean | nucleus | 58.54 | 59.02 |
| KRH12334 | Soybean | nucleus | 57.72 | 58.44 |
| CDY30182 | Canola | nucleus | 55.28 | 55.74 |
| CDY46719 | Canola | nucleus | 59.76 | 55.68 |
| PGSC0003DMT400010463 | Potato | nucleus | 53.66 | 52.38 |
| Solyc07g018010.2.1 | Tomato | nucleus | 53.66 | 52.17 |
| CDY43542 | Canola | nucleus | 55.69 | 52.09 |
| CDX68608 | Canola | nucleus | 54.88 | 51.33 |
| KRH19109 | Soybean | nucleus | 46.75 | 49.78 |
| PGSC0003DMT400044959 | Potato | nucleus | 46.34 | 49.35 |
| Solyc05g014590.2.1 | Tomato | nucleus | 43.9 | 46.75 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 49.19 | 46.54 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 37.4 | 43.81 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 44.72 | 39.57 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 44.31 | 39.21 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 44.31 | 39.21 |
| KRH02772 | Soybean | nucleus | 53.66 | 38.82 |
| Zm00001d025141_P003 | Maize | nucleus | 40.65 | 38.17 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 24.39 | 37.97 |
| Zm00001d024522_P001 | Maize | nucleus | 39.43 | 37.6 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 45.12 | 36.39 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 38.21 | 35.07 |
| EES14602 | Sorghum | nucleus | 41.06 | 35.07 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 38.21 | 34.31 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 39.84 | 33.22 |
| Os04t0301500-01 | Rice | nucleus | 41.46 | 32.9 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 31.3 | 32.63 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 19.92 | 32.03 |
| TraesCSU01G138400.2 | Wheat | nucleus | 32.11 | 31.47 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 32.93 | 30.57 |
| EES05013 | Sorghum | nucleus | 34.55 | 30.14 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 31.3 | 30.08 |
| TraesCSU01G138900.1 | Wheat | nucleus | 31.3 | 29.96 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 30.89 | 29.57 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 30.49 | 29.3 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 29.27 | 28.69 |
| Zm00001d004095_P001 | Maize | nucleus | 35.77 | 28.66 |
| Os04t0300600-00 | Rice | cytosol | 34.15 | 28.47 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 30.08 | 27.31 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 31.71 | 26.71 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 33.33 | 25.95 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 28.86 | 25.91 |
| CDY19416 | Canola | nucleus | 19.11 | 25.41 |
| CDX98033 | Canola | nucleus | 19.11 | 25.41 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 32.52 | 24.69 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 32.52 | 21.51 |
| CDY30505 | Canola | nucleus | 24.39 | 19.11 |
| CDX77160 | Canola | nucleus | 24.39 | 18.99 |
| CDX83286 | Canola | nucleus | 23.98 | 18.85 |
| CDX71377 | Canola | nucleus | 23.58 | 18.35 |
| CDY31199 | Canola | nucleus | 23.17 | 18.21 |
| CDY04543 | Canola | nucleus | 23.17 | 18.04 |
| CDX97027 | Canola | nucleus | 19.51 | 16.11 |
| CDX69821 | Canola | nucleus | 19.51 | 15.84 |
| CDY37835 | Canola | nucleus | 22.76 | 15.64 |
| CDY69978 | Canola | nucleus | 22.36 | 15.36 |
| CDY08769 | Canola | nucleus | 21.95 | 15.04 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 11.38 | 13.86 |
| CDY34878 | Canola | cytosol | 20.73 | 13.28 |
| CDY54227 | Canola | nucleus | 19.92 | 12.89 |
| CDY37964 | Canola | nucleus | 20.73 | 12.56 |
| CDX93399 | Canola | nucleus | 20.33 | 12.2 |
| CDY28529 | Canola | nucleus | 20.73 | 11.62 |
| CDY21073 | Canola | nucleus | 20.33 | 11.6 |
| CDY34601 | Canola | nucleus | 20.73 | 11.49 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 4.47 | 11.0 |
| CDY48974 | Canola | nucleus | 21.14 | 10.86 |
| CDX89760 | Canola | nucleus | 23.17 | 10.04 |
| CDY31399 | Canola | nucleus | 22.76 | 9.88 |
| CDY02227 | Canola | nucleus | 22.76 | 9.86 |
| CDX71316 | Canola | nucleus | 22.36 | 9.68 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078FFW0 | UniProt:A0A078FFW0 | EnsemblPlants:CDY11882 | ProteinID:CDY11882 |
| ProteinID:CDY11882.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00060718001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC1ABD | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g13080DBnaC03g13080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFW0]
Coordinates
chrLK032015:-:217719..220198
Molecular Weight (calculated)
28136.2 Da
IEP (calculated)
4.480
GRAVY (calculated)
-0.418
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDINQEFNN YWEPSSFLQN KEFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVLERN RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQF
101: DETKLESEIR ELESTPKSSL SFGKDFDRDL LVPVTSKRMR QLDSGYSRSL IEVLEFKVTF MGERTMVVNV TCNKRTDTMV KLCEVFESLN LKIITFNLNS
201: FSGMIFNTLF IEADEEEQDV LRLKIESGIG AYNGAQSPTW SMESIY
101: DETKLESEIR ELESTPKSSL SFGKDFDRDL LVPVTSKRMR QLDSGYSRSL IEVLEFKVTF MGERTMVVNV TCNKRTDTMV KLCEVFESLN LKIITFNLNS
201: FSGMIFNTLF IEADEEEQDV LRLKIESGIG AYNGAQSPTW SMESIY
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.