Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G270300.1 | Wheat | nucleus | 97.84 | 97.84 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 97.48 | 97.48 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 53.24 | 96.73 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 95.32 | 86.89 |
| Os04t0301500-01 | Rice | nucleus | 73.38 | 65.81 |
| Zm00001d025141_P003 | Maize | nucleus | 60.79 | 64.5 |
| Zm00001d024522_P001 | Maize | nucleus | 58.99 | 63.57 |
| EES14602 | Sorghum | nucleus | 65.11 | 62.85 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 48.92 | 52.31 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 39.21 | 51.9 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 45.32 | 51.64 |
| KRH37338 | Soybean | nucleus | 43.88 | 50.0 |
| KRH12334 | Soybean | nucleus | 42.81 | 48.97 |
| PGSC0003DMT400010463 | Potato | nucleus | 42.45 | 46.83 |
| Solyc07g018010.2.1 | Tomato | nucleus | 42.45 | 46.64 |
| KRH19109 | Soybean | nucleus | 38.13 | 45.89 |
| Bra002756.1-P | Field mustard | nucleus | 39.93 | 45.12 |
| Bra006831.1-P | Field mustard | nucleus | 39.93 | 45.12 |
| CDY38270 | Canola | nucleus | 39.93 | 45.12 |
| CDX88610 | Canola | nucleus | 39.93 | 45.12 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 44.24 | 44.89 |
| CDY11882 | Canola | nucleus | 39.21 | 44.31 |
| CDY47924 | Canola | nucleus | 38.49 | 43.5 |
| Bra020462.1-P | Field mustard | nucleus | 38.13 | 43.09 |
| CDY42237 | Canola | nucleus | 37.41 | 42.98 |
| PGSC0003DMT400044959 | Potato | nucleus | 35.61 | 42.86 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 39.21 | 41.13 |
| Solyc05g014590.2.1 | Tomato | nucleus | 33.81 | 40.69 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 37.05 | 40.23 |
| AT5G57150.4 | Thale cress | nucleus | 38.13 | 40.15 |
| CDY52738 | Canola | cytosol | 22.66 | 38.18 |
| Bra024115.1-P | Field mustard | nucleus | 33.09 | 37.7 |
| CDY30182 | Canola | nucleus | 33.09 | 37.7 |
| Bra011152.1-P | Field mustard | nucleus | 33.09 | 37.1 |
| CDY46719 | Canola | nucleus | 34.17 | 35.98 |
| CDY43542 | Canola | nucleus | 33.81 | 35.74 |
| CDX68608 | Canola | nucleus | 33.09 | 34.98 |
| AT4G29930.3 | Thale cress | nucleus | 32.37 | 34.22 |
| KRH02772 | Soybean | nucleus | 41.37 | 33.82 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 33.09 | 31.19 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 15.11 | 26.58 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 20.14 | 16.33 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 16.19 | 14.75 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 19.78 | 14.51 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 16.91 | 13.54 |
| TraesCS7B01G465400.1 | Wheat | nucleus | 16.91 | 13.51 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 14.03 | 12.79 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 22.3 | 12.53 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 24.46 | 12.3 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 24.1 | 12.12 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 21.58 | 11.41 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | InterPro:ACT_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 |
| PFAM:PF00010 | PFscan:PS50888 | PFscan:PS51671 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF70 | SMART:SM00353 |
| SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS2B01G289900 | EnsemblPlants:TraesCS2B01G289900.1 | InterPro:bHLH_dom | TIGR:cd00083 | SEG:seg |
Description
No Description!
Coordinates
chr2B:-:402218195..402220152
Molecular Weight (calculated)
30442.1 Da
IEP (calculated)
4.355
GRAVY (calculated)
-0.276
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDMGENFA YYWETQRYLE SEELVDSIFV GATEDAISYY DSSSPDGSHS SSTPMGSALP GAGMGMDGTG ANKNILMERD RRRKLNEKLY TLRSVVPNIT
101: KMDKASIIKD AIEYIQQLQA EERQMEAEVS ALESATGAED DYDGGLSVDQ VSSAQRKKVK RALSVSSMND ALLAAAATVA SPPVEVLELR VSEVSEKVLV
201: VSVTCSKQRD AMTKVCRALE ELRLRVITAN ITSVSGCLMH TLFVEVDEMD RFQMKETVEA ALSQLDSMGS PPLSSMSY
101: KMDKASIIKD AIEYIQQLQA EERQMEAEVS ALESATGAED DYDGGLSVDQ VSSAQRKKVK RALSVSSMND ALLAAAATVA SPPVEVLELR VSEVSEKVLV
201: VSVTCSKQRD AMTKVCRALE ELRLRVITAN ITSVSGCLMH TLFVEVDEMD RFQMKETVEA ALSQLDSMGS PPLSSMSY
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.