Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G058000.1 | Wheat | nucleus | 88.2 | 89.67 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 88.52 | 82.57 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 76.72 | 79.05 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 65.9 | 57.93 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 56.39 | 56.39 |
| Os03t0135700-01 | Rice | nucleus | 61.64 | 53.11 |
| EER92904 | Sorghum | nucleus | 61.31 | 50.13 |
| Zm00001d027546_P001 | Maize | nucleus | 59.02 | 48.91 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 36.07 | 46.41 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.41 | 45.57 |
| KRH73107 | Soybean | mitochondrion, nucleus | 23.61 | 44.17 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 36.72 | 39.16 |
| KRH62159 | Soybean | nucleus | 38.69 | 35.76 |
| KRG99605 | Soybean | cytosol | 18.36 | 35.44 |
| KRH52870 | Soybean | nucleus | 37.7 | 34.74 |
| KRH16156 | Soybean | nucleus | 30.82 | 34.56 |
| KRH72519 | Soybean | nucleus | 37.38 | 34.23 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 37.38 | 34.13 |
| KRH16909 | Soybean | nucleus | 37.38 | 33.93 |
| KRH74438 | Soybean | nucleus | 37.05 | 33.83 |
| KRH39520 | Soybean | nucleus | 36.72 | 33.63 |
| KRH45479 | Soybean | nucleus | 34.43 | 32.81 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 35.08 | 32.33 |
| PGSC0003DMT400016360 | Potato | nucleus | 35.74 | 32.25 |
| TraesCS7B01G465400.1 | Wheat | nucleus | 36.72 | 32.18 |
| PGSC0003DMT400026937 | Potato | nucleus | 34.1 | 31.9 |
| Bra009022.1-P | Field mustard | nucleus | 31.48 | 31.68 |
| Solyc02g063430.2.1 | Tomato | nucleus | 33.11 | 31.46 |
| CDX97027 | Canola | nucleus | 30.49 | 31.21 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 32.79 | 31.06 |
| Solyc12g088130.1.1 | Tomato | nucleus | 34.1 | 30.95 |
| CDX69821 | Canola | nucleus | 30.49 | 30.69 |
| Solyc02g091690.2.1 | Tomato | nucleus | 32.79 | 30.4 |
| AT5G65640.1 | Thale cress | nucleus | 34.75 | 30.2 |
| AT5G10570.1 | Thale cress | nucleus | 30.82 | 29.84 |
| CDY08769 | Canola | nucleus | 35.08 | 29.8 |
| Bra024404.1-P | Field mustard | nucleus | 35.08 | 29.8 |
| PGSC0003DMT400078675 | Potato | nucleus | 32.46 | 29.55 |
| CDY69978 | Canola | nucleus | 34.1 | 29.05 |
| CDY37835 | Canola | nucleus | 33.77 | 28.77 |
| Bra031852.1-P | Field mustard | nucleus | 33.77 | 28.77 |
| PGSC0003DMT400005209 | Potato | nucleus | 20.33 | 24.03 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 22.62 | 18.21 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 12.79 | 15.23 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 23.28 | 14.34 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 12.79 | 14.23 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 12.79 | 14.03 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 12.13 | 13.96 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 22.95 | 13.31 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 13.11 | 11.66 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 18.69 | 10.31 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 18.69 | 10.31 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G070400.1 | EnsemblPlantsGene:TraesCS3B01G070400 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF4 | PFAM:PF00010 | SEG:seg | SUPFAM:SSF47459 | MapMan:15.5.32 |
Description
No Description!
Coordinates
chr3B:-:42368753..42369970
Molecular Weight (calculated)
32815.0 Da
IEP (calculated)
5.041
GRAVY (calculated)
-0.320
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPLDEESFL DELMPLQREE APALTYQGSN GMMTISDLLF YGGEACTAEE SSSVGFVWPF QQPMPPSPPA ARPHPPNQEF NFNYLSEVCN PWRSYIPDPP
101: AVVQAAAGKG PLTLPLHDAL ASSSTFVFGG GDGESLGMRS MPAFGTHPES KLNAGSGTPS KNLMAERRRR KRLNDRLSML RSTVPKISKI GATPEELNLL
201: KNFSSGGNEE TPTRSSTKVC ANVENRGGGD TKIEIFCSTN PGALIATVTA LDVLGLEIKQ CVVSCFSDFA MQASCSQAEG KRQVISTDEI KQALLRSVGY
301: GGRCL
101: AVVQAAAGKG PLTLPLHDAL ASSSTFVFGG GDGESLGMRS MPAFGTHPES KLNAGSGTPS KNLMAERRRR KRLNDRLSML RSTVPKISKI GATPEELNLL
201: KNFSSGGNEE TPTRSSTKVC ANVENRGGGD TKIEIFCSTN PGALIATVTA LDVLGLEIKQ CVVSCFSDFA MQASCSQAEG KRQVISTDEI KQALLRSVGY
301: GGRCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.