Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G328700.1 | Wheat | cytosol | 40.0 | 83.56 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 92.79 | 80.17 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 92.46 | 79.89 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 91.15 | 79.43 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 87.87 | 77.23 |
| TraesCSU01G069400.1 | Wheat | nucleus | 88.85 | 76.99 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 87.54 | 76.72 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 88.52 | 76.49 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 88.2 | 76.42 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 87.54 | 73.96 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 84.59 | 72.68 |
| Os03t0135700-01 | Rice | nucleus | 72.13 | 62.15 |
| KRH73107 | Soybean | mitochondrion, nucleus | 32.79 | 61.35 |
| EER92904 | Sorghum | nucleus | 70.16 | 57.37 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 56.39 | 56.39 |
| Zm00001d027546_P001 | Maize | nucleus | 66.23 | 54.89 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 40.66 | 52.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.34 | 50.63 |
| KRG99605 | Soybean | cytosol | 24.26 | 46.84 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 41.97 | 44.76 |
| KRH62159 | Soybean | nucleus | 44.26 | 40.91 |
| KRH39520 | Soybean | nucleus | 44.59 | 40.84 |
| KRH74438 | Soybean | nucleus | 44.59 | 40.72 |
| KRH16156 | Soybean | nucleus | 36.07 | 40.44 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 44.26 | 40.42 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 43.61 | 40.18 |
| KRH45479 | Soybean | nucleus | 41.64 | 39.69 |
| KRH52870 | Soybean | nucleus | 42.95 | 39.58 |
| KRH16909 | Soybean | nucleus | 42.95 | 38.99 |
| KRH72519 | Soybean | nucleus | 41.64 | 38.14 |
| PGSC0003DMT400016360 | Potato | nucleus | 41.31 | 37.28 |
| CDX97027 | Canola | nucleus | 35.74 | 36.58 |
| TraesCS7B01G465400.1 | Wheat | nucleus | 41.31 | 36.21 |
| Bra009022.1-P | Field mustard | nucleus | 35.74 | 35.97 |
| PGSC0003DMT400026937 | Potato | nucleus | 38.36 | 35.89 |
| AT5G10570.1 | Thale cress | nucleus | 37.05 | 35.87 |
| Solyc02g063430.2.1 | Tomato | nucleus | 37.7 | 35.83 |
| Solyc12g088130.1.1 | Tomato | nucleus | 39.34 | 35.71 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 37.7 | 35.71 |
| CDX69821 | Canola | nucleus | 35.41 | 35.64 |
| Solyc02g091690.2.1 | Tomato | nucleus | 38.36 | 35.56 |
| PGSC0003DMT400078675 | Potato | nucleus | 39.02 | 35.52 |
| AT5G65640.1 | Thale cress | nucleus | 39.34 | 34.19 |
| Bra024404.1-P | Field mustard | nucleus | 39.67 | 33.7 |
| CDY08769 | Canola | nucleus | 39.67 | 33.7 |
| CDY69978 | Canola | nucleus | 37.38 | 31.84 |
| Bra031852.1-P | Field mustard | nucleus | 37.05 | 31.56 |
| CDY37835 | Canola | nucleus | 37.05 | 31.56 |
| PGSC0003DMT400005209 | Potato | nucleus | 26.23 | 31.01 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 27.87 | 22.43 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 14.75 | 17.58 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 27.87 | 17.17 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 14.75 | 16.98 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 14.75 | 16.42 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 14.75 | 16.19 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 27.54 | 15.97 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 16.07 | 14.29 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 20.66 | 11.39 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 20.66 | 11.39 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G331900.1 | EnsemblPlantsGene:TraesCS4B01G331900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF4 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr4B:-:622333584..622334878
Molecular Weight (calculated)
32992.0 Da
IEP (calculated)
5.651
GRAVY (calculated)
-0.313
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSDLLFYG ASSGTDLAGP FLQQPMAPPH RSHEEFNFDY LSEVCNPYRS CVGVVPRHGV AHGAGQALVQ YPLHDAMAED DPSGSNLHRG GGSSSSPVPF
101: VFGAGGAGES PEMIRGVFTG AHARSKLNGG TTSKNLMAER RRRKRLNDRL SMLRSIVPKI SKMDRTSILG DTIDYVNELT ERIKTLEEEI GATPEELNLL
201: NTTKNFFSGS SEEMPMRNST KFVIEKQGDG TRIDICCATS PGVLISTVSA LEVLGLEIEQ CVFSCFGDFA MQASCSQEEG RSRVTSTDEI KQALFTSAGY
301: GGRCL
101: VFGAGGAGES PEMIRGVFTG AHARSKLNGG TTSKNLMAER RRRKRLNDRL SMLRSIVPKI SKMDRTSILG DTIDYVNELT ERIKTLEEEI GATPEELNLL
201: NTTKNFFSGS SEEMPMRNST KFVIEKQGDG TRIDICCATS PGVLISTVSA LEVLGLEIEQ CVFSCFGDFA MQASCSQEEG RSRVTSTDEI KQALFTSAGY
301: GGRCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.