Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37835 | Canola | nucleus | 97.49 | 97.49 |
| CDY08769 | Canola | nucleus | 90.22 | 89.97 |
| AT5G65640.1 | Thale cress | nucleus | 86.59 | 88.32 |
| KRH73107 | Soybean | mitochondrion, nucleus | 31.84 | 69.94 |
| CDX97027 | Canola | nucleus | 54.19 | 65.1 |
| CDX69821 | Canola | nucleus | 54.19 | 64.03 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 17.32 | 62.0 |
| KRG99605 | Soybean | cytosol | 27.09 | 61.39 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 40.5 | 60.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.39 | 59.49 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 39.11 | 59.07 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 50.0 | 54.08 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 42.18 | 52.8 |
| KRH74438 | Soybean | nucleus | 49.16 | 52.69 |
| KRH45479 | Soybean | nucleus | 46.37 | 51.88 |
| KRH39520 | Soybean | nucleus | 48.04 | 51.65 |
| KRH62159 | Soybean | nucleus | 46.09 | 50.0 |
| KRH52870 | Soybean | nucleus | 45.81 | 49.55 |
| KRH16909 | Soybean | nucleus | 46.37 | 49.4 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 46.09 | 49.4 |
| PGSC0003DMT400026937 | Potato | nucleus | 44.69 | 49.08 |
| Solyc02g063430.2.1 | Tomato | nucleus | 43.85 | 48.91 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 43.85 | 48.76 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 19.83 | 48.63 |
| KRH16156 | Soybean | nucleus | 36.59 | 48.16 |
| KRH72519 | Soybean | nucleus | 44.41 | 47.75 |
| PGSC0003DMT400078675 | Potato | nucleus | 43.58 | 46.57 |
| Solyc02g091690.2.1 | Tomato | nucleus | 42.74 | 46.5 |
| CDY19416 | Canola | nucleus | 22.35 | 43.24 |
| CDX98033 | Canola | nucleus | 22.35 | 43.24 |
| Os03t0135700-01 | Rice | nucleus | 37.71 | 38.14 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 31.84 | 37.38 |
| Zm00001d027546_P001 | Maize | nucleus | 37.43 | 36.41 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 32.96 | 36.09 |
| EER92904 | Sorghum | nucleus | 37.43 | 35.92 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 29.33 | 35.47 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 28.77 | 34.33 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 29.05 | 34.1 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 33.52 | 33.8 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 32.96 | 33.71 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 33.24 | 33.71 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 32.68 | 33.62 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 32.4 | 33.43 |
| TraesCSU01G069400.1 | Wheat | nucleus | 32.68 | 33.24 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 32.68 | 33.14 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 32.4 | 32.95 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 32.4 | 32.86 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 30.73 | 30.47 |
| TraesCSU01G069300.1 | Wheat | nucleus | 29.33 | 29.83 |
| CDX68608 | Canola | nucleus | 18.16 | 24.71 |
| CDY43542 | Canola | nucleus | 18.16 | 24.71 |
| CDY30182 | Canola | nucleus | 16.76 | 24.59 |
| CDY46719 | Canola | nucleus | 17.88 | 24.24 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 13.13 | 23.27 |
| CDY47924 | Canola | nucleus | 15.92 | 23.17 |
| CDY38270 | Canola | nucleus | 15.92 | 23.17 |
| CDY42237 | Canola | nucleus | 15.64 | 23.14 |
| CDY28529 | Canola | nucleus | 27.93 | 22.78 |
| CDY11882 | Canola | nucleus | 15.36 | 22.36 |
| CDX88610 | Canola | nucleus | 15.36 | 22.36 |
| CDY21073 | Canola | nucleus | 26.82 | 22.27 |
| CDY34601 | Canola | nucleus | 27.09 | 21.85 |
| CDY48974 | Canola | nucleus | 28.77 | 21.5 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 8.38 | 18.99 |
| CDY04543 | Canola | nucleus | 16.2 | 18.35 |
| CDY31199 | Canola | nucleus | 15.92 | 18.21 |
| CDY52738 | Canola | cytosol | 8.38 | 18.18 |
| CDY30505 | Canola | nucleus | 15.92 | 18.15 |
| CDX77160 | Canola | nucleus | 15.92 | 18.04 |
| CDX71377 | Canola | nucleus | 15.92 | 18.04 |
| CDX83286 | Canola | nucleus | 15.36 | 17.57 |
| CDY34878 | Canola | cytosol | 17.04 | 15.89 |
| CDY54227 | Canola | nucleus | 16.48 | 15.53 |
| CDX89760 | Canola | nucleus | 23.46 | 14.79 |
| CDY31399 | Canola | nucleus | 23.18 | 14.64 |
| CDX71316 | Canola | nucleus | 23.18 | 14.61 |
| CDY02227 | Canola | nucleus | 22.91 | 14.44 |
| CDY37964 | Canola | nucleus | 15.92 | 14.04 |
| CDX93399 | Canola | nucleus | 15.36 | 13.41 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078JQW0 | UniProt:A0A078JQW0 | EnsemblPlants:CDY69978 | ProteinID:CDY69978 |
| ProteinID:CDY69978.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00093985001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF6 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE66D1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng66200DBnaCnng66200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQW0]
Coordinates
chrLK040826:+:1611..3443
Molecular Weight (calculated)
40280.2 Da
IEP (calculated)
4.629
GRAVY (calculated)
-0.574
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSTQMNVF EELLVPTKQE TTDNYNYNSN INNLSFNGGF DHHQLFSNGW NIDYLCFNNE EEDENTLLYS SSFMDLISQP PPLLLHQTPP LPPPSSSSPP
101: LISSTASTFD DPFLEALQEI IDSSSSSPPV MLPTSQEESF INHSSYPSPL VESDQSKSFS VRYCGGVVET TNKKKSKKLE GQPSKNLMAE RRRRKRLNDR
201: LSMLRSIVPN ISKMDRTSIL GDAIDYMKEL LDKINKLQDE EQELGVSNSS HHSKLFGDIK DLNTNEPLVR NSPKFEVDRR DQDTRVEICC SPKPGLLLST
301: VNTLETLGLE IEQCVISCFS DFSLHASCSE AAQQRDFINS EDIKQALFRN AGYGGKCL
101: LISSTASTFD DPFLEALQEI IDSSSSSPPV MLPTSQEESF INHSSYPSPL VESDQSKSFS VRYCGGVVET TNKKKSKKLE GQPSKNLMAE RRRRKRLNDR
201: LSMLRSIVPN ISKMDRTSIL GDAIDYMKEL LDKINKLQDE EQELGVSNSS HHSKLFGDIK DLNTNEPLVR NSPKFEVDRR DQDTRVEICC SPKPGLLLST
301: VNTLETLGLE IEQCVISCFS DFSLHASCSE AAQQRDFINS EDIKQALFRN AGYGGKCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.