CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19416	Canola	nucleus	22.28	24.32
CDX98033	Canola	nucleus	22.28	24.32
KXG27392	Sorghum	cytosol	15.84	20.0
CDX97027	Canola	nucleus	20.79	14.09
CDX69821	Canola	nucleus	20.79	13.86
CDY37835	Canola	nucleus	23.27	13.13
CDY69978	Canola	nucleus	23.27	13.13
CDY08769	Canola	nucleus	23.27	13.09
CDY43542	Canola	nucleus	16.83	12.93
CDY28529	Canola	nucleus	27.72	12.76
CDX68608	Canola	nucleus	16.34	12.55
CDY46719	Canola	nucleus	16.34	12.5
KRH54112	Soybean	nucleus	28.22	12.34
CDY21073	Canola	nucleus	26.24	12.3
CDY30182	Canola	nucleus	14.85	12.3
KRH63854	Soybean	nucleus	28.22	12.26
CDY48974	Canola	nucleus	28.71	12.11
CDY34601	Canola	nucleus	26.24	11.94
CDY47924	Canola	nucleus	13.86	11.38
CDY11882	Canola	nucleus	13.86	11.38
CDX88610	Canola	nucleus	13.86	11.38
CDY38270	Canola	nucleus	13.86	11.38
CDY42237	Canola	nucleus	13.37	11.16
PGSC0003DMT400074075	Potato	nucleus	29.21	11.13
CDX97028	Canola	cytosol, plastid, vacuole	5.45	11.0
Solyc06g068870.2.1	Tomato	nucleus	28.71	10.92
VIT_17s0000g00330.t01	Wine grape	nucleus	29.21	10.73
CDY30505	Canola	nucleus	15.35	9.87
CDX77160	Canola	nucleus	15.35	9.81
CDY04543	Canola	nucleus	14.85	9.49
CDX71377	Canola	nucleus	14.85	9.49
CDY31199	Canola	nucleus	14.36	9.27
CDX83286	Canola	nucleus	14.36	9.27
CDY52738	Canola	cytosol	6.93	8.48
CDY37964	Canola	nucleus	15.84	7.88
CDX93399	Canola	nucleus	15.84	7.8
CDY54227	Canola	nucleus	14.36	7.63
CDY31399	Canola	nucleus	20.79	7.41
CDX71316	Canola	nucleus	20.79	7.39
CDY34878	Canola	cytosol	13.86	7.29
CDY02227	Canola	nucleus	20.3	7.22
CDX89760	Canola	nucleus	20.3	7.22
CDY03557	Canola	cytosol, nucleus, plastid	4.46	5.7

Protein Annotations

EnsemblPlants:CDX99537	EnsemblPlantsGene:GSBRNA2T00107958001	GO:A0A078EET2	PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	ProteinID:CDX99537
ProteinID:CDX99537.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBEC69	MapMan:15.5.32	:

Description

BnaC09g24550D

Coordinates

chrLK031911:-:581565..582792

Molecular Weight (calculated)

23277.2 Da

IEP (calculated)

9.922

GRAVY (calculated)

-0.142

Length

202 amino acids

Sequence
(BLAST)

001: MTRVPSYYLN STLQHSFYLW LLTLFVWWAP ALKFQRWPNL ILWFVSGETR AMLLLPGSPS SRRLKEISKR GQPWQTPKFL ALRLVSYQSV ANQYHKLVCS
101: RVSGVLFVLM DSYVDLEYKK YRGKNSSIFR GFGCHLQIDR SSILGDAIYY LNELLQRIND LHNELESTPL GSLPQASTSF HPLAPTPDTL SCRVKKDLCP
201: SS

Best Arabidopsis Sequence Match ( AT3G26744.6 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEVIF YSQLKG

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.