Factsheet for VIT_17s0000g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27392	Sorghum	cytosol	20.55	70.62
KRH63854	Soybean	nucleus	56.73	67.1
KRH54112	Soybean	nucleus	54.55	64.94
Solyc06g068870.2.1	Tomato	nucleus	61.45	63.65
PGSC0003DMT400074075	Potato	nucleus	61.09	63.4
VIT_14s0068g01200.t01	Wine grape	nucleus	61.64	63.01
VIT_01s0244g00130.t01	Wine grape	nucleus	51.09	54.46
VIT_00s2739g00010.t01	Wine grape	cytosol	6.18	40.48
VIT_18s0001g08040.t01	Wine grape	nucleus	20.18	33.23
VIT_17s0000g03550.t01	Wine grape	nucleus	19.45	33.23
VIT_00s1312g00010.t01	Wine grape	nucleus	19.45	32.33
CDX99537	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	10.73	29.21
VIT_11s0052g00100.t01	Wine grape	nucleus	12.55	28.28
VIT_11s0037g01310.t01	Wine grape	cytosol	5.82	27.35
VIT_01s0127g00650.t01	Wine grape	nucleus	8.0	25.0
VIT_06s0061g00720.t01	Wine grape	nucleus	12.55	21.97
VIT_01s0127g00860.t01	Wine grape	nucleus	18.55	16.67
VIT_03s0038g02540.t01	Wine grape	nucleus	18.91	16.02

Protein Annotations

EntrezGene:100245749	wikigene:100245749	MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	EMBL:AM458473
ProteinID:CAN67898	ProteinID:CAN67898.1	ProteinID:CCB43362	ProteinID:CCB43362.1	ncoils:Coil	UniProt:F6GT41
EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100245749	wikigene:LOC100245749	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001984FF6	ArrayExpress:VIT_17s0000g00330
EnsemblPlantsGene:VIT_17s0000g00330	EnsemblPlants:VIT_17s0000g00330.t01	unigene:Vvi.21033	RefSeq:XP_002284528	RefSeq:XP_002284528.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:232854..236378

Molecular Weight (calculated)

59840.3 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.536

Length

550 amino acids

Sequence
(BLAST)

001: MLSGVNGVVW MEGREEEEEA ASWIRNSNNN NGGGSSCGVV DSSKDDMGSL STFKSMLDVD DEWYFTGNAG QNHQEIRDIS FSTNLAGADN LLLHPVDSSS
101: SCSPSSSVFN NLDPSQVQFF LPPKPTLSSL LNLISNNPLE HSFDMGCEQG FLETQAPNSQ TLVNRGGEVL PHFADMGSHA QMNTPNLISE PQFGITRVLQ
201: LTENSAPIGA GFSSSGIRGF EEGSMNSLFV NRSKLLRPLE TFPSVGAQPT LFQKRAALRK NLADNGSILG GLGPEGGQVL SGVEDDKGKR EMGEENDRKW
301: RNSNAEDIED ASIDASGLNY DSDELTENNK MEENGKNSGN NSNANSTVTG GDHKGKKKGL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD
401: AIEYLKELLQ RINNLHNELE STPPGSSLTP TTSFHPLTPT PPTLPCRIKE ELCPSSLSSP NGQPARVEVR AREGRAVNIH MFCGRRPGLL LSTMRALDSL
501: GLDIQQAVIS CFNGFALDIF RAEQSKEGQD VHPEQIKAVL LDSAGFHGMM

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.