Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s2739g00010.t01 | Wine grape | cytosol | 20.5 | 78.57 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 67.39 | 65.56 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 45.34 | 61.09 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 44.1 | 59.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.86 | 58.23 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 58.07 | 55.99 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 47.2 | 53.15 |
| Solyc02g063430.2.1 | Tomato | nucleus | 50.0 | 50.16 |
| PGSC0003DMT400016360 | Potato | nucleus | 50.93 | 48.52 |
| Solyc02g091690.2.1 | Tomato | nucleus | 47.52 | 46.5 |
| AT5G65640.1 | Thale cress | nucleus | 49.38 | 45.3 |
| CDX97027 | Canola | nucleus | 41.3 | 44.63 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 20.19 | 44.52 |
| CDY08769 | Canola | nucleus | 49.38 | 44.29 |
| Bra024404.1-P | Field mustard | nucleus | 49.38 | 44.29 |
| Solyc12g088130.1.1 | Tomato | nucleus | 45.96 | 44.05 |
| Bra009022.1-P | Field mustard | nucleus | 41.3 | 43.89 |
| CDY69978 | Canola | nucleus | 48.76 | 43.85 |
| AT5G10570.1 | Thale cress | nucleus | 42.86 | 43.81 |
| CDX69821 | Canola | nucleus | 40.99 | 43.56 |
| CDY37835 | Canola | nucleus | 47.52 | 42.74 |
| Bra031852.1-P | Field mustard | nucleus | 47.52 | 42.74 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 35.71 | 37.7 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 34.16 | 37.16 |
| Os03t0135700-01 | Rice | nucleus | 40.68 | 37.01 |
| Zm00001d027546_P001 | Maize | nucleus | 42.24 | 36.96 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 36.96 | 36.39 |
| EER92904 | Sorghum | nucleus | 41.93 | 36.19 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 39.13 | 35.49 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 38.2 | 35.34 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 38.2 | 35.14 |
| VIT_11s0037g01310.t01 | Wine grape | cytosol | 12.73 | 35.04 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 38.2 | 34.84 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 38.2 | 34.84 |
| TraesCSU01G069400.1 | Wheat | nucleus | 37.89 | 34.66 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 37.27 | 34.58 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 31.99 | 34.33 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 37.58 | 34.28 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 36.96 | 33.81 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 31.06 | 32.79 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 35.71 | 31.86 |
| TraesCSU01G069300.1 | Wheat | nucleus | 33.23 | 30.4 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 16.46 | 21.72 |
| VIT_17s0000g00330.t01 | Wine grape | nucleus | 33.23 | 19.45 |
| VIT_01s0244g00130.t01 | Wine grape | nucleus | 30.75 | 19.19 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 31.37 | 18.77 |
| VIT_01s0127g00650.t01 | Wine grape | nucleus | 9.32 | 17.05 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 16.46 | 16.88 |
| VIT_01s0127g00860.t01 | Wine grape | nucleus | 21.43 | 11.27 |
| VIT_03s0038g02540.t01 | Wine grape | nucleus | 21.74 | 10.79 |
Protein Annotations
| EntrezGene:100264526 | wikigene:100264526 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CCB43226 | ProteinID:CCB43226.1 |
| ncoils:Coil | UniProt:F6GTN0 | EMBL:FN594950 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100264526 | wikigene:LOC100264526 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF6 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000210864D | ArrayExpress:VIT_17s0000g03550 | EnsemblPlantsGene:VIT_17s0000g03550 | EnsemblPlants:VIT_17s0000g03550.t01 | RefSeq:XP_002276557 | RefSeq:XP_002276557.2 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr17:-:3428358..3429670
Molecular Weight (calculated)
36727.8 Da
IEP (calculated)
5.052
GRAVY (calculated)
-0.539
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MELTQHGFLE EFLDLRGETW NTYPTMDEFI PDGWNFDTFN ENVVFATTNP SLEGFSMSKG PAFEYPFNEI HPSVGGFTVP EIDSLHGKNM MLQFPIQYPS
101: VVKDEEISLL NNSPHIVEER DNSCKFEMEQ AANTPVFSTS PFGERKARVK KMEGQPSKNL MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDAIDYM
201: RELLERMNKL QEEQMQAGTS RTNSPGIFKE LKPNGMITKN SPKFDVERRN LDTRIEICCA EKQGLLLSTV STLKALGLEI QQCVISCFNE FSVQASCSDA
301: AEQQTMLNSE DIKQALFRNA GY
101: VVKDEEISLL NNSPHIVEER DNSCKFEMEQ AANTPVFSTS PFGERKARVK KMEGQPSKNL MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDAIDYM
201: RELLERMNKL QEEQMQAGTS RTNSPGIFKE LKPNGMITKN SPKFDVERRN LDTRIEICCA EKQGLLLSTV STLKALGLEI QQCVISCFNE FSVQASCSDA
301: AEQQTMLNSE DIKQALFRNA GY
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.