Factsheet for VIT_01s0127g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00100.t01	Wine grape	nucleus	18.75	13.52
VIT_00s2739g00010.t01	Wine grape	cytosol	6.25	13.1
KRH45665	Soybean	nucleus	36.36	12.9
Solyc05g005300.2.1	Tomato	nucleus	30.68	11.2
VIT_11s0037g01310.t01	Wine grape	cytosol	7.39	11.11
CDY54227	Canola	nucleus	23.86	11.05
CDY34878	Canola	cytosol	23.86	10.94
Bra031723.1-P	Field mustard	cytosol	23.86	10.88
VIT_06s0061g00720.t01	Wine grape	nucleus	18.75	10.51
VIT_01s0127g00860.t01	Wine grape	nucleus	34.66	9.97
AT1G10610.1	Thale cress	nucleus	24.43	9.75
CDY37964	Canola	nucleus	22.16	9.61
Bra019914.1-P	Field mustard	cytosol	22.73	9.59
CDX93399	Canola	nucleus	22.16	9.51
VIT_03s0038g02540.t01	Wine grape	nucleus	34.66	9.4
VIT_17s0000g03550.t01	Wine grape	nucleus	17.05	9.32
VIT_00s1312g00010.t01	Wine grape	nucleus	16.48	8.76
VIT_18s0001g08040.t01	Wine grape	nucleus	15.91	8.38
VIT_01s0244g00130.t01	Wine grape	nucleus	23.86	8.14
VIT_17s0000g00330.t01	Wine grape	nucleus	25.0	8.0
VIT_14s0068g01200.t01	Wine grape	nucleus	24.43	7.99

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AM488829	ProteinID:CAN84164	ProteinID:CAN84164.1	ProteinID:CBI28531
ProteinID:CBI28531.3	ncoils:Coil	UniProt:D7TDF8	EMBL:FN595761	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	PANTHER:PTHR31945	PANTHER:PTHR31945:SF14
SUPFAM:SSF47459	UniParc:UPI0001BE3102	ArrayExpress:VIT_01s0127g00650	EnsemblPlantsGene:VIT_01s0127g00650	EnsemblPlants:VIT_01s0127g00650.t01	SEG:seg

Description

No Description!

Coordinates

chr1:+:7989001..7990113

Molecular Weight (calculated)

20211.2 Da

IEP (calculated)

6.139

GRAVY (calculated)

-0.469

Length

176 amino acids

Sequence
(BLAST)

001: MDRASILGDA IQYIVELQQE VKKLQDEVNM EQEDCNMKDA ELKRSSRYSP ATTEHNRGSS SIREKKQIES QRVQVEVKLI GTREFLLKLL CEQKRGGFAR
101: LMEAINVLGL QVVDANITTF NGNVLNIFRV EAREIRMYIE IHWDEKKKRA SCDSENEAFT LSIESSPVHV SSLHLV

Best Arabidopsis Sequence Match ( AT1G10610.3 )
(BLAST)

001: MPLYPGIHGE VVMSKSPKWL VNSGSKMEMF STRVLVPVSD GLVELFAFDM RPFDESMVHL IMSRCTTFFE PFPEQRLQFR IIPRAEESMS SGVNLSVEGG
101: GSSSVSNPSS ETQNLFGNYP NASCVEILRE EQTPCLIMNK EKDVVVQNAN DSKANKKLLP TENFKSKNLH SERKRRERIN QAMYGLRAVV PKITKLNKIG
201: IFSDAVDYIN ELLVEKQKLE DELKGINEME CKEIAAEEQS AIADPEAERV SSKSNKRVKK NEVKIEVHET GERDFLIRVV QEHKQDGFKR LIEAVDLCEL
301: EIIDVNFTRL DLTVMTVLNV KANKDGIACG ILRDLLLKMM ITSI

Arabidopsis Description

BHLH90Transcription factor bHLH90 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.