Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0127g00860.t01 | Wine grape | nucleus | 81.36 | 86.27 |
| KRH36073 | Soybean | nucleus | 45.45 | 51.66 |
| Solyc08g062780.1.1 | Tomato | nucleus | 44.53 | 48.49 |
| KRG90676 | Soybean | extracellular, vacuole | 42.99 | 48.35 |
| Bra002004.1-P | Field mustard | nucleus | 42.06 | 48.15 |
| CDY31399 | Canola | nucleus | 42.06 | 48.15 |
| CDX89760 | Canola | nucleus | 42.06 | 48.06 |
| CDX71316 | Canola | nucleus | 42.06 | 48.06 |
| GSMUA_Achr1P07450_001 | Banana | nucleus, plastid | 21.57 | 47.78 |
| AT2G16910.1 | Thale cress | nucleus | 41.91 | 47.64 |
| Bra013041.1-P | Field mustard | nucleus | 41.45 | 47.36 |
| CDY02227 | Canola | nucleus | 41.45 | 47.36 |
| PGSC0003DMT400021165 | Potato | nucleus | 31.59 | 47.13 |
| GSMUA_Achr3P00640_001 | Banana | nucleus | 20.03 | 43.62 |
| GSMUA_Achr1P07330_001 | Banana | nucleus | 24.81 | 38.15 |
| Os02t0120500-01 | Rice | nucleus | 29.74 | 34.96 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 29.58 | 34.91 |
| TraesCS6D01G069400.1 | Wheat | nucleus | 29.74 | 34.84 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 29.58 | 34.72 |
| VIT_01s0127g00650.t01 | Wine grape | nucleus | 9.4 | 34.66 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 29.43 | 34.54 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 29.58 | 34.41 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 29.58 | 34.41 |
| TraesCS6D01G069300.1 | Wheat | nucleus | 29.43 | 34.29 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 28.97 | 33.94 |
| KXG29315 | Sorghum | nucleus | 29.58 | 33.63 |
| Zm00001d053895_P001 | Maize | nucleus | 28.81 | 29.92 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 10.79 | 28.69 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 12.17 | 23.65 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 11.86 | 23.26 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 10.79 | 21.74 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 9.71 | 20.06 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 16.02 | 19.33 |
| VIT_01s0244g00130.t01 | Wine grape | nucleus | 15.25 | 19.19 |
| VIT_17s0000g00330.t01 | Wine grape | nucleus | 16.02 | 18.91 |
| VIT_11s0037g01310.t01 | Wine grape | cytosol | 3.24 | 17.95 |
| VIT_00s2739g00010.t01 | Wine grape | cytosol | 2.0 | 15.48 |
Protein Annotations
| EntrezGene:100246916 | wikigene:100246916 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CCB60612 | ProteinID:CCB60612.1 |
| ncoils:Coil | UniProt:F6I0Z6 | EMBL:FN596508 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100246916 | wikigene:LOC100246916 |
| InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF11 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000210A7E6 | ArrayExpress:VIT_03s0038g02540 | EnsemblPlantsGene:VIT_03s0038g02540 | EnsemblPlants:VIT_03s0038g02540.t01 |
| RefSeq:XP_002277897 | RefSeq:XP_002277897.2 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:+:1771005..1775813
Molecular Weight (calculated)
72412.0 Da
IEP (calculated)
4.950
GRAVY (calculated)
-0.552
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MFQNQVNRTY FDNREHSSPV TSRFFEVGMM LIAGETINMV QSLMERLRPL VGLKSRDWDY CVLWKLSEDQ RFLDWMDCCC AGGGENSTQN GGEEHLFPVS
101: SVLPCRDAMS QHPRTKSCDL LAQLPSSISL DSGIHGQTLI SNQPRWLNFC NSSDSSILEE TVGTGLLIPV LGGLIELFVA KQVAEDQHVI NFVTTQCHMI
201: SMEQEAMMNS SNINSIFSVN VNGGNADENQ KDPNNHFQAP ISPVTAMEDL NDLPISVDQI RLCSSPMNFL QQFSYTSESS IKNDVFFEGS HDSFLSEKTM
301: MNALDCGFQE MEAMQKSMHI EMMEPLANKE QLGDDHKDLS AKRTANQADS VSDCSDQIDD DDDLKFQRRT GKGAQSKNID AERRRRKKLN DRLYALRSLV
401: PKISKVAAVL DRASILGDAI EFVKELQKQA KDLQDELEEN SEDEGGKMNA GINSNPNNLQ SEILNDNGSG VNIGPKTENE ETQNRFLMGA AGNGIAASAC
501: RPPSAKQNHE TDQITDDKAQ QMEPQVEVAQ IEGNDFFVKV FCEHKAGGFV RLMEALSSLG LEVTNANVTS CKGLVSNLFK VEKRDSEMVQ ADHVRDSLLE
601: LTKNPSEKWH GQMAYASENG GGLDFHNHHH HHHLHSHLLS SHHLHHLQN
101: SVLPCRDAMS QHPRTKSCDL LAQLPSSISL DSGIHGQTLI SNQPRWLNFC NSSDSSILEE TVGTGLLIPV LGGLIELFVA KQVAEDQHVI NFVTTQCHMI
201: SMEQEAMMNS SNINSIFSVN VNGGNADENQ KDPNNHFQAP ISPVTAMEDL NDLPISVDQI RLCSSPMNFL QQFSYTSESS IKNDVFFEGS HDSFLSEKTM
301: MNALDCGFQE MEAMQKSMHI EMMEPLANKE QLGDDHKDLS AKRTANQADS VSDCSDQIDD DDDLKFQRRT GKGAQSKNID AERRRRKKLN DRLYALRSLV
401: PKISKVAAVL DRASILGDAI EFVKELQKQA KDLQDELEEN SEDEGGKMNA GINSNPNNLQ SEILNDNGSG VNIGPKTENE ETQNRFLMGA AGNGIAASAC
501: RPPSAKQNHE TDQITDDKAQ QMEPQVEVAQ IEGNDFFVKV FCEHKAGGFV RLMEALSSLG LEVTNANVTS CKGLVSNLFK VEKRDSEMVQ ADHVRDSLLE
601: LTKNPSEKWH GQMAYASENG GGLDFHNHHH HHHLHSHLLS SHHLHHLQN
001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
Arabidopsis Description
AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.