Factsheet for TraesCS6A01G071300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G069400.1	Wheat	nucleus	96.18	95.49
TraesCS6B01G095700.1	Wheat	nucleus	95.09	94.58
TraesCS6A01G071200.1	Wheat	nucleus	94.0	93.32
HORVU6Hr1G012730.1	Barley	nucleus	92.18	90.86
HORVU6Hr1G012760.1	Barley	nucleus	92.18	90.86
Os02t0120500-01	Rice	nucleus	60.0	59.78
KXG29315	Sorghum	nucleus	61.27	59.02
Zm00001d053895_P001	Maize	nucleus	62.0	54.56
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	22.18	41.64
GSMUA_Achr3P00640_001	Banana	nucleus	20.73	38.26
GSMUA_Achr1P07330_001	Banana	nucleus	25.09	32.7
CDY31399	Canola	nucleus	32.73	31.75
Bra002004.1-P	Field mustard	nucleus	32.55	31.57
KRH36073	Soybean	nucleus	32.55	31.35
AT2G16910.1	Thale cress	nucleus	32.55	31.35
CDY02227	Canola	nucleus	32.36	31.34
Bra013041.1-P	Field mustard	nucleus	32.36	31.34
CDX71316	Canola	nucleus	32.18	31.16
VIT_01s0127g00860.t01	Wine grape	nucleus	34.55	31.05
CDX89760	Canola	nucleus	31.82	30.81
Solyc08g062780.1.1	Tomato	nucleus	33.09	30.54
KRG90676	Soybean	extracellular, vacuole	32.0	30.5
PGSC0003DMT400021165	Potato	nucleus	23.64	29.89
VIT_03s0038g02540.t01	Wine grape	nucleus	34.91	29.58
TraesCS2A01G271700.1	Wheat	nucleus	12.0	23.74
TraesCS5A01G533200.1	Wheat	nucleus	10.91	23.44
TraesCS5A01G533900.1	Wheat	nucleus	9.82	22.88
TraesCS7A01G543300.1	Wheat	nucleus	12.91	21.58
TraesCS5A01G503500.1	Wheat	nucleus	13.09	20.45
TraesCS3A01G057900.1	Wheat	nucleus	12.0	20.18
TraesCS5A01G503300.1	Wheat	nucleus	12.91	20.11
TraesCS3A01G028200.3	Wheat	nucleus	9.82	19.93
TraesCS3A01G442200.1	Wheat	nucleus	13.82	19.84
TraesCS3A01G442600.1	Wheat	nucleus	9.64	18.15
TraesCS5A01G503400.1	Wheat	nucleus	11.82	18.01
TraesCS3A01G058000.1	Wheat	nucleus	9.82	18.0
TraesCS7A01G311800.1	Wheat	nucleus	16.55	17.47
TraesCS2A01G281200.1	Wheat	nucleus	10.73	17.46
TraesCS4A01G263300.2	Wheat	nucleus	15.09	17.01

Protein Annotations

EnsemblPlants:TraesCS6A01G071300.1	EnsemblPlantsGene:TraesCS6A01G071300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR31945
PANTHER:PTHR31945:SF11	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:39130173..39132388

Molecular Weight (calculated)

58501.1 Da

IEP (calculated)

4.533

GRAVY (calculated)

-0.472

Length

550 amino acids

Sequence
(BLAST)

001: MVGGGDYHQA VHGHGGGGGG TVEAALRPLV GGAHGWDYCI YWRLSPDQRF LEMTGFCCSA EFEAQVATLA DVPSSIPLDS SSIGMHAQAL LSNQPIWQSS
101: GGAPGPDLLT GYEAASSGGE KTRLLVPVAG GIVELFASRY MAEEQQMAEL VMAQCGGGGQ GWQETEAQGF AWDAAAAAAA DPGRLYAAAS LNLFDGAGGS
201: GSGEPFLAGV LEDGAAGVGW QYAAESSEPP STVAQEHQQL HGSGVGRADS GSERSDMQLG DPDDNVDGET QRGSGKDGGG KRQQCKNLIA ERKRRKKLNN
301: RLYTLRSLVP NITKMDRASI LGDAIDYIVG LQKQVKDLQD ELEDPNPPGG TGGDSKAPDV LLDDHPPPGL DNDEDSPQQH PFPSAGGKRA RKEEAGEEEE
401: KEAEDQDMEP QVEVRQVEGK EFFLQVLCSH KSGRFVRIMD EIAALGLQIT SVNVTSYNKL VLNVFRAVMK DNEVAVPADR VRDSLLEVTR EMYGGSGAWS
501: SPVPPPPLTN AKLDGMDGQA VPAVAGDHYQ LHHQVLGGYH HQHLHYLAMD

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.