Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G018400.1 | Wheat | nucleus | 87.08 | 89.06 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 81.55 | 68.21 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 93.36 | 68.01 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 51.29 | 58.9 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 54.61 | 57.81 |
| KRH37338 | Soybean | nucleus | 36.16 | 40.16 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 34.32 | 38.11 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 29.52 | 38.1 |
| KRH12334 | Soybean | nucleus | 33.95 | 37.86 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 38.38 | 37.41 |
| KRH19109 | Soybean | nucleus | 29.89 | 35.06 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 33.58 | 35.0 |
| PGSC0003DMT400010463 | Potato | nucleus | 32.47 | 34.92 |
| Solyc07g018010.2.1 | Tomato | nucleus | 32.47 | 34.78 |
| Zm00001d004095_P001 | Maize | nucleus | 38.38 | 33.88 |
| PGSC0003DMT400044959 | Potato | nucleus | 28.41 | 33.33 |
| Solyc05g014590.2.1 | Tomato | nucleus | 26.94 | 31.6 |
| CDY38270 | Canola | nucleus | 28.41 | 31.3 |
| Bra002756.1-P | Field mustard | nucleus | 28.41 | 31.3 |
| Os04t0300600-00 | Rice | cytosol | 33.95 | 31.19 |
| CDY42237 | Canola | nucleus | 27.68 | 30.99 |
| CDY47924 | Canola | nucleus | 28.04 | 30.89 |
| Bra020462.1-P | Field mustard | nucleus | 28.04 | 30.89 |
| CDX88610 | Canola | nucleus | 28.04 | 30.89 |
| Bra006831.1-P | Field mustard | nucleus | 28.04 | 30.89 |
| AT5G57150.4 | Thale cress | nucleus | 29.89 | 30.68 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 32.47 | 30.14 |
| CDY11882 | Canola | nucleus | 27.31 | 30.08 |
| CDY30182 | Canola | nucleus | 26.94 | 29.92 |
| Bra024115.1-P | Field mustard | nucleus | 26.94 | 29.92 |
| CDY46719 | Canola | nucleus | 28.04 | 28.79 |
| CDY43542 | Canola | nucleus | 27.31 | 28.14 |
| AT4G29930.3 | Thale cress | nucleus | 26.94 | 27.76 |
| CDX68608 | Canola | nucleus | 26.94 | 27.76 |
| Bra011152.1-P | Field mustard | nucleus | 24.72 | 27.02 |
| CDY52738 | Canola | cytosol | 16.24 | 26.67 |
| KRH02772 | Soybean | nucleus | 33.21 | 26.47 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 25.09 | 23.05 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 11.07 | 18.99 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 23.25 | 18.64 |
| TraesCS7A01G543300.1 | Wheat | nucleus | 18.45 | 15.2 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 16.24 | 13.46 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 16.97 | 13.07 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 18.45 | 13.05 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 16.61 | 12.75 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 13.28 | 12.0 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 15.5 | 11.63 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 19.93 | 11.07 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 21.03 | 10.29 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 19.19 | 9.98 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 19.93 | 9.82 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G028200.3 | EnsemblPlantsGene:TraesCS3A01G028200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF70 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:15081456..15084734
Molecular Weight (calculated)
29733.3 Da
IEP (calculated)
4.563
GRAVY (calculated)
-0.212
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADMDASLD FLELEAHLVF DLGDADSKRW MSLADCCSSY LPAEDSLSGL DSCYNDSTGS PSTASARATR ASKNIVEERD RRRRLNEKLY AIRGVVPNIT
101: KMDKASIIQD AVAYIEELQE QERRILAEVS DLEAGGCTAV VVKSEASTGS EGVEDAGVGF SPPKKTRRTA SSSINDPVTS PATHPVLLEL EVMPIAEKLA
201: VVSMRHDNAQ HVMAKMYKAL DPLRLKVITS SVTFVDGRTV HTMFIEMEET DSVETIKEMV QAALSHLEFL M
101: KMDKASIIQD AVAYIEELQE QERRILAEVS DLEAGGCTAV VVKSEASTGS EGVEDAGVGF SPPKKTRRTA SSSINDPVTS PATHPVLLEL EVMPIAEKLA
201: VVSMRHDNAQ HVMAKMYKAL DPLRLKVITS SVTFVDGRTV HTMFIEMEET DSVETIKEMV QAALSHLEFL M
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEFILALQF IC
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEFILALQF IC
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.