Factsheet for GSMUA_Achr7P16000_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	42.69	81.02
GSMUA_Achr6P30900_001	Banana	nucleus	57.31	70.95
VIT_11s0052g00100.t01	Wine grape	nucleus	53.46	56.97
KRH37338	Soybean	nucleus	51.92	55.33
KRH12334	Soybean	nucleus	51.15	54.73
PGSC0003DMT400010463	Potato	nucleus	48.85	50.4
Solyc07g018010.2.1	Tomato	nucleus	48.85	50.2
CDX88610	Canola	nucleus	46.92	49.59
CDY38270	Canola	nucleus	46.92	49.59
Bra006831.1-P	Field mustard	nucleus	46.92	49.59
Bra002756.1-P	Field mustard	nucleus	46.92	49.59
PGSC0003DMT400044959	Potato	nucleus	43.85	49.35
CDY11882	Canola	nucleus	46.54	49.19
TraesCS2B01G289900.1	Wheat	nucleus	52.31	48.92
TraesCS2A01G271700.1	Wheat	nucleus	51.92	48.56
TraesCS2D01G270300.1	Wheat	nucleus	51.92	48.56
Zm00001d025141_P003	Maize	nucleus	48.85	48.47
CDY47924	Canola	nucleus	45.0	47.56
CDY42237	Canola	nucleus	44.23	47.52
KRH19109	Soybean	nucleus	41.92	47.19
Bra020462.1-P	Field mustard	nucleus	44.62	47.15
Solyc05g014590.2.1	Tomato	nucleus	41.15	46.32
HORVU2Hr1G066100.1	Barley	cytosol, nucleus	51.92	44.26
Zm00001d024522_P001	Maize	nucleus	43.85	44.19
HORVU2Hr1G066090.2	Barley	cytosol	25.77	43.79
AT5G57150.4	Thale cress	nucleus	44.23	43.56
CDY52738	Canola	cytosol	27.31	43.03
TraesCS2D01G270000.2	Wheat	nucleus	44.23	42.91
Bra024115.1-P	Field mustard	nucleus	40.0	42.62
CDY30182	Canola	nucleus	40.0	42.62
EES14602	Sorghum	nucleus	46.92	42.36
Bra011152.1-P	Field mustard	nucleus	40.0	41.94
CDY43542	Canola	nucleus	42.31	41.83
CDX68608	Canola	nucleus	41.92	41.44
CDY46719	Canola	nucleus	41.54	40.91
TraesCS2B01G289700.2	Wheat	nucleus	43.08	40.88
Os04t0301500-01	Rice	nucleus	48.08	40.32
AT4G29930.3	Thale cress	nucleus	40.0	39.54
TraesCS5A01G533900.1	Wheat	nucleus	35.38	38.98
TraesCSU01G138400.2	Wheat	nucleus	36.15	37.45
TraesCS3B01G018400.1	Wheat	nucleus	37.69	36.98
TraesCS4B01G364800.1	Wheat	nucleus	36.15	36.72
TraesCSU01G138900.1	Wheat	nucleus	36.15	36.58
TraesCS5A01G533200.1	Wheat	nucleus	35.38	35.94
HORVU4Hr1G087590.1	Barley	nucleus	35.38	35.8
EES05013	Sorghum	nucleus	38.46	35.46
KRH02772	Soybean	nucleus	46.15	35.29
GSMUA_Achr4P12700_001	Banana	nucleus	39.62	34.92
Zm00001d004095_P001	Maize	nucleus	41.15	34.85
TraesCS3A01G028200.3	Wheat	nucleus	35.0	33.58
HORVU4Hr1G087610.1	Barley	nucleus	32.31	33.47
Os04t0300600-00	Rice	cytosol	36.54	32.2
TraesCS3A01G442600.1	Wheat	nucleus	35.77	31.85
TraesCS3D01G435200.1	Wheat	nucleus	37.69	31.01
CDY03557	Canola	cytosol, nucleus, plastid	18.08	29.75
HORVU2Hr1G066000.7	Barley	nucleus	30.77	29.2
HORVU3Hr1G005500.3	Barley	cytosol, nucleus	34.23	27.47
TraesCS3D01G017700.1	Wheat	nucleus	36.15	25.27
GSMUA_Achr6P08070_001	Banana	nucleus	19.23	22.94
GSMUA_Achr1P26300_001	Banana	nucleus	19.23	20.92
GSMUA_AchrUn_...	Banana	nucleus	18.85	20.68
GSMUA_Achr7P03930_001	Banana	nucleus	18.85	20.68
GSMUA_Achr8P34120_001	Banana	nucleus	20.38	18.53
GSMUA_Achr6P27600_001	Banana	nucleus	21.15	18.09
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	19.62	17.41
GSMUA_Achr3P00640_001	Banana	nucleus	18.46	16.11
GSMUA_Achr1P07330_001	Banana	nucleus	19.23	11.85
GSMUA_Achr10P...	Banana	nucleus	22.69	11.43
GSMUA_Achr11P...	Banana	nucleus	21.92	10.84
GSMUA_Achr10P...	Banana	nucleus	19.62	10.02
GSMUA_AchrUn_...	Banana	nucleus	10.0	7.85
GSMUA_Achr6P08060_001	Banana	nucleus	11.15	7.65

Protein Annotations

EnsemblPlants:GSMUA_Achr7P16000_001	EnsemblPlants:GSMUA_Achr7T16000_001	EnsemblPlantsGene:GSMUA_Achr7G16000_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF26	PFAM:PF00010	PFscan:PS50888	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296EF8F	UniProt:M0THY7	MapMan:15.5.32	:	:

Description

Transcription factor bHLH35 [Source:GMGC_GENE;Acc:GSMUA_Achr7G16000_001]

Coordinates

chr7:+:12888196..12890816

Molecular Weight (calculated)

29955.7 Da

IEP (calculated)

4.514

GRAVY (calculated)

-0.524

Length

260 amino acids

Sequence
(BLAST)

001: MDDMEAEYSH YWETKRFIDA EEFESWGFEE AISGGYYDSS SPEGTTSSAT VKNIAMERNR RKKLNEKLYA LRSVVPNITK MDKASIIKDA IDYIQQLQEQ
101: ERKMMAEMSE LEPLREEKMS MGDFEYDVVP FMQQRKKKRT PRSSSAPGSP TSLPIEVLEL RVNEMGEKTM VVSITCNKKR DTMIKVCELF EFLNLKVITA
201: NITSVSENLL HTLFVETDEM DSAQLKEKIE VAIAELDVPK SPISYVTYQQ EGFDEAIFLQ

Best Arabidopsis Sequence Match ( AT5G57150.1 )
(BLAST)

001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.