Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 22.71 | 48.91 |
| KRH12334 | Soybean | nucleus | 34.92 | 42.39 |
| KRH37338 | Soybean | nucleus | 34.92 | 42.21 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 34.24 | 41.39 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 28.81 | 40.48 |
| CDY11882 | Canola | nucleus | 33.22 | 39.84 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 34.92 | 39.62 |
| PGSC0003DMT400010463 | Potato | nucleus | 33.56 | 39.29 |
| Solyc07g018010.2.1 | Tomato | nucleus | 33.56 | 39.13 |
| Bra006831.1-P | Field mustard | nucleus | 32.54 | 39.02 |
| CDX88610 | Canola | nucleus | 32.54 | 39.02 |
| CDY47924 | Canola | nucleus | 32.54 | 39.02 |
| CDY42237 | Canola | nucleus | 31.86 | 38.84 |
| Bra020462.1-P | Field mustard | nucleus | 32.2 | 38.62 |
| CDY38270 | Canola | nucleus | 31.53 | 37.8 |
| Bra002756.1-P | Field mustard | nucleus | 31.53 | 37.8 |
| KRH19109 | Soybean | nucleus | 28.81 | 36.8 |
| PGSC0003DMT400044959 | Potato | nucleus | 27.46 | 35.06 |
| CDX68608 | Canola | nucleus | 29.83 | 33.46 |
| CDY52738 | Canola | cytosol | 18.64 | 33.33 |
| AT5G57150.4 | Thale cress | nucleus | 29.83 | 33.33 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 31.19 | 33.09 |
| CDY43542 | Canola | nucleus | 29.49 | 33.08 |
| Bra011152.1-P | Field mustard | nucleus | 27.8 | 33.06 |
| Solyc05g014590.2.1 | Tomato | nucleus | 25.76 | 32.9 |
| Zm00001d025141_P003 | Maize | nucleus | 29.15 | 32.82 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 30.85 | 32.73 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 30.85 | 32.73 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 29.49 | 32.46 |
| Bra024115.1-P | Field mustard | nucleus | 26.78 | 32.38 |
| CDY30182 | Canola | nucleus | 26.78 | 32.38 |
| CDY46719 | Canola | nucleus | 28.47 | 31.82 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 29.49 | 31.75 |
| Zm00001d024522_P001 | Maize | nucleus | 27.12 | 31.01 |
| AT4G29930.3 | Thale cress | nucleus | 27.46 | 30.8 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 31.19 | 30.16 |
| EES14602 | Sorghum | nucleus | 29.15 | 29.86 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 23.73 | 29.66 |
| Os04t0301500-01 | Rice | nucleus | 30.85 | 29.35 |
| TraesCSU01G138900.1 | Wheat | nucleus | 25.08 | 28.79 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 24.75 | 28.52 |
| TraesCSU01G138400.2 | Wheat | nucleus | 24.07 | 28.29 |
| KRH02772 | Soybean | nucleus | 32.54 | 28.24 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 14.58 | 28.1 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 24.41 | 28.02 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 24.75 | 27.55 |
| Zm00001d004095_P001 | Maize | nucleus | 28.47 | 27.36 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 23.05 | 27.09 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 23.05 | 26.56 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 24.41 | 26.28 |
| EES05013 | Sorghum | nucleus | 24.41 | 25.53 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 25.08 | 25.34 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 13.56 | 25.32 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 23.05 | 25.09 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 25.76 | 24.05 |
| Os04t0300600-00 | Rice | cytosol | 23.73 | 23.73 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 18.64 | 23.01 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 18.31 | 22.78 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 16.27 | 22.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.29 | 21.52 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 20.0 | 20.63 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 22.37 | 20.37 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 20.34 | 19.74 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 24.41 | 19.35 |
| GSMUA_Achr1P07450_001 | Banana | nucleus, plastid | 16.27 | 16.38 |
| GSMUA_Achr3P00640_001 | Banana | nucleus | 16.27 | 16.11 |
| GSMUA_Achr1P07330_001 | Banana | nucleus | 16.95 | 11.85 |
| GSMUA_Achr10P... | Banana | nucleus | 18.64 | 10.66 |
| GSMUA_Achr11P... | Banana | nucleus | 17.63 | 9.89 |
| GSMUA_Achr10P... | Banana | nucleus | 16.95 | 9.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 8.47 | 7.55 |
| GSMUA_Achr6P08060_001 | Banana | nucleus | 9.49 | 7.39 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P12700_001 | EnsemblPlants:GSMUA_Achr4T12700_001 | EnsemblPlantsGene:GSMUA_Achr4G12700_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000295F4F5 | UniProt:M0SND5 | MapMan:15.5.32 | : |
Description
Putative Transcription factor bHLH35 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12700_001]
Coordinates
chr4:+:9407516..9412050
Molecular Weight (calculated)
33173.1 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.271
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPYQIEYAN YWETEGFFDA VEFCSWDDEK TLSSSPDMAA QSTSSTLPKN IMAERERRKK FNKTLYDLRS VVPNITKMNK TSVILDAINY IQELQEQERS
101: LVEEISELES PKQITAPPHG IKDEDLLHAQ MQRRRAASMS PIEAMEVSVA EMGNGISLVS ITCNKKWNAI VMVLELIESL DLRIITANIT SSFGKVFLSL
201: VIQADGRPSA YLKERIEANF KKKKNPFFLV AEEVITDIAG LLLLHQLQQL SEGGLIVPVE GIGHTPELVN PHGSGIGGIV GECRGRRRRR RVLKP
101: LVEEISELES PKQITAPPHG IKDEDLLHAQ MQRRRAASMS PIEAMEVSVA EMGNGISLVS ITCNKKWNAI VMVLELIESL DLRIITANIT SSFGKVFLSL
201: VIQADGRPSA YLKERIEANF KKKKNPFFLV AEEVITDIAG LLLLHQLQQL SEGGLIVPVE GIGHTPELVN PHGSGIGGIV GECRGRRRRR RVLKP
001: MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI
101: DQEKTLEAEI RELESRSTLL ENPFKQMDYS TRVQHYPIEV LEMKVTWMGE KTVVVCITCS KKRETMVQLC KVLESLNLNI LTTNFSSFTS RLSTTLFLQA
201: DEEESSAVEA KIQMAIAAYN DPNCLINF
101: DQEKTLEAEI RELESRSTLL ENPFKQMDYS TRVQHYPIEV LEMKVTWMGE KTVVVCITCS KKRETMVQLC KVLESLNLNI LTTNFSSFTS RLSTTLFLQA
201: DEEESSAVEA KIQMAIAAYN DPNCLINF
Arabidopsis Description
BHLH27Transcription factor bHLH27 [Source:UniProtKB/Swiss-Prot;Acc:Q700E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.