Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P30900_001 | Banana | nucleus | 29.49 | 41.43 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 37.29 | 41.04 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 33.9 | 40.98 |
| PGSC0003DMT400044959 | Potato | nucleus | 31.19 | 39.83 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 36.61 | 39.42 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 30.85 | 38.56 |
| TraesCSU01G138900.1 | Wheat | nucleus | 32.88 | 37.74 |
| PGSC0003DMT400010463 | Potato | nucleus | 32.2 | 37.7 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 32.54 | 37.5 |
| KRH37338 | Soybean | nucleus | 30.85 | 37.3 |
| Solyc07g018010.2.1 | Tomato | nucleus | 31.86 | 37.15 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 32.2 | 37.11 |
| KRH19109 | Soybean | nucleus | 28.81 | 36.8 |
| KRH12334 | Soybean | nucleus | 30.17 | 36.63 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 32.2 | 36.54 |
| TraesCSU01G138400.2 | Wheat | nucleus | 30.85 | 36.26 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 31.86 | 35.47 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 30.85 | 35.41 |
| CDY38270 | Canola | nucleus | 29.49 | 35.37 |
| Bra002756.1-P | Field mustard | nucleus | 29.49 | 35.37 |
| Solyc05g014590.2.1 | Tomato | nucleus | 27.46 | 35.06 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 29.83 | 35.06 |
| CDX88610 | Canola | nucleus | 29.15 | 34.96 |
| Bra006831.1-P | Field mustard | nucleus | 29.15 | 34.96 |
| Zm00001d004095_P001 | Maize | nucleus | 35.59 | 34.2 |
| CDY11882 | Canola | nucleus | 28.47 | 34.15 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 31.19 | 33.95 |
| Bra020462.1-P | Field mustard | nucleus | 28.14 | 33.74 |
| CDY47924 | Canola | nucleus | 28.14 | 33.74 |
| CDY42237 | Canola | nucleus | 27.46 | 33.47 |
| AT5G57150.4 | Thale cress | nucleus | 29.83 | 33.33 |
| CDY52738 | Canola | cytosol | 17.97 | 32.12 |
| Os04t0301500-01 | Rice | nucleus | 33.56 | 31.94 |
| Bra011152.1-P | Field mustard | nucleus | 26.1 | 31.05 |
| Bra024115.1-P | Field mustard | nucleus | 25.08 | 30.33 |
| CDY30182 | Canola | nucleus | 25.08 | 30.33 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 32.2 | 29.32 |
| CDY46719 | Canola | nucleus | 26.1 | 29.17 |
| CDY43542 | Canola | nucleus | 25.76 | 28.9 |
| CDX68608 | Canola | nucleus | 25.08 | 28.14 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 26.1 | 28.1 |
| KRH02772 | Soybean | nucleus | 30.17 | 26.18 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 32.88 | 26.08 |
| AT4G29930.3 | Thale cress | nucleus | 23.05 | 25.86 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 12.88 | 24.05 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 23.73 | 23.73 |
| Os04t0381700-00 | Rice | nucleus | 18.98 | 15.91 |
| Os03t0135700-01 | Rice | nucleus | 16.95 | 14.12 |
| Os01t0928000-01 | Rice | nucleus | 16.95 | 13.12 |
| Os10t0544200-01 | Rice | nucleus | 16.27 | 12.63 |
| Os11t0523700-01 | Rice | nucleus | 19.32 | 10.88 |
| Os02t0120500-01 | Rice | nucleus | 18.98 | 10.14 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A0P0W8E2 | ProteinID:BAS88464.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os04g0300600 | EnsemblPlants:Os04t0300600-00 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF70 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000393A636 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
basic helix-loop-helix protein 007Hypothetical conserved gene. (Os04t0300600-00)
Coordinates
chr4:-:13399837..13401045
Molecular Weight (calculated)
31494.0 Da
IEP (calculated)
6.245
GRAVY (calculated)
0.088
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGFGGGMYG PAAAPATPAM VEKEYDESLS ELYAYTSQSR YADSSSPDVV NLCSTAVASA AAAASSKNIA MERDRRKRLN EKLFALRAVV PKITKMDKAS
101: IVRDAIAHIE KLQEEERQLL DEISVLQSAA AVAATAVEDV DDSGVTMPSM KKLRSTPPLD GGGGALRVAS SPPLQILELQ VSKVGEKTVA VSIRCAKTRG
201: AMAKVCHAVE SLYLKVVSAS VAAVDGTIVH TMFVEVPNKI TCHIFHYPDP LSIIMSSTFM LLPISEWSTL PLILSHGCNC CTCYCADVTG MTSRE
101: IVRDAIAHIE KLQEEERQLL DEISVLQSAA AVAATAVEDV DDSGVTMPSM KKLRSTPPLD GGGGALRVAS SPPLQILELQ VSKVGEKTVA VSIRCAKTRG
201: AMAKVCHAVE SLYLKVVSAS VAAVDGTIVH TMFVEVPNKI TCHIFHYPDP LSIIMSSTFM LLPISEWSTL PLILSHGCNC CTCYCADVTG MTSRE
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDRSW PLEEAISGSY DSSSPDGAAS SPASKNIVSE RNRRQKLNQR LFALRSVVPN ITKMDKASII KDAISYIEGL
101: QYEEKKLEAE IRELESTPKS SLSFSKDFDR DLLVPVTSKK MKQLDSGSST SLIEVLELKV TFMGERTMVV SVTCNKRTDT MVKLCEVFES LNLKILTSNL
201: TSFSGMIFHT VFIELRPNIY WVVWFLVFMS IFGPTIIVIW SIWFIKKKII LSLWRMKKNK RCCG
101: QYEEKKLEAE IRELESTPKS SLSFSKDFDR DLLVPVTSKK MKQLDSGSST SLIEVLELKV TFMGERTMVV SVTCNKRTDT MVKLCEVFES LNLKILTSNL
201: TSFSGMIFHT VFIELRPNIY WVVWFLVFMS IFGPTIIVIW SIWFIKKKII LSLWRMKKNK RCCG
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.