Factsheet for Os10t0544200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G118860.1	Barley	plastid	11.58	62.86
Os03t0135700-01	Rice	nucleus	48.68	52.26
HORVU7Hr1G062400.4	Barley	plastid	14.74	31.64
Os01t0928000-01	Rice	nucleus	25.53	25.46
HORVU4Hr1G032690.2	Barley	nucleus, plastid	17.89	22.01
Os11t0523700-01	Rice	nucleus	27.11	19.66
Os04t0300600-00	Rice	cytosol	12.63	16.27
Os04t0301500-01	Rice	nucleus	11.58	14.19
Os04t0381700-00	Rice	nucleus	11.84	12.78
Os02t0120500-01	Rice	nucleus	17.11	11.78

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:ABB47949.1	EMBL:AK063669	ProteinID:BAF27114.1	ProteinID:BAT11888.1
ProteinID:EAZ16862.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os10g0544200	EnsemblPlants:Os10t0544200-01	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF15	UniProt:Q336V8	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00005E1F84
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

basic helix-loop-helix protein 004Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os10t0544200-01)

Coordinates

chr10:-:21244725..21247074

Molecular Weight (calculated)

40768.9 Da

IEP (calculated)

4.826

GRAVY (calculated)

-0.297

Length

380 amino acids

Sequence
(BLAST)

001: MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLQAYPMM MSPMCGDGVM LGDLLVGGGN ARNTLASPPP PSFPLPVPLT TTTPCPPLHE VSFEFDSIDC
101: LGEVCNPYKR SGGAVRATAA AQVMVAAMDP RREAASSAVA VAAVEEEERC KARRGAGGGG DSGELAPMFV FGGGGGAAAS VRPRSCRPPQ PGAPSKNLMA
201: ERRRRKRLND RLSMLRSVVP RISKMDRTSI LGDTIGYVKE LMDRIKNLQV EAATGDSSSS STENLSMLKL NTLKPPPSSS SGEETPLIRN STRFEVERRE
301: NGSTRIEMAC AAIPELLPST LAALEALGVE IEQCVISCFD DFAMQASCLQ DDKKREMTRD TEEIKQTLFR SAGYGDGCLI

Best Arabidopsis Sequence Match ( AT5G65640.1 )
(BLAST)

001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L

Arabidopsis Description

BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.