Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G270300.1 | Wheat | nucleus | 65.81 | 73.38 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 65.81 | 73.38 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 65.81 | 73.38 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 35.16 | 71.24 |
| EES14602 | Sorghum | nucleus | 63.55 | 68.4 |
| Zm00001d025141_P003 | Maize | nucleus | 56.77 | 67.18 |
| Zm00001d024522_P001 | Maize | nucleus | 55.48 | 66.67 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 65.48 | 66.56 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 32.58 | 48.1 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 40.32 | 48.08 |
| KRH37338 | Soybean | nucleus | 37.74 | 47.95 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 37.74 | 47.95 |
| KRH12334 | Soybean | nucleus | 36.45 | 46.5 |
| KRH19109 | Soybean | nucleus | 33.23 | 44.59 |
| Bra002756.1-P | Field mustard | nucleus | 33.87 | 42.68 |
| CDY38270 | Canola | nucleus | 33.87 | 42.68 |
| PGSC0003DMT400010463 | Potato | nucleus | 34.52 | 42.46 |
| Solyc07g018010.2.1 | Tomato | nucleus | 34.52 | 42.29 |
| Bra006831.1-P | Field mustard | nucleus | 33.23 | 41.87 |
| CDX88610 | Canola | nucleus | 33.23 | 41.87 |
| CDY47924 | Canola | nucleus | 32.9 | 41.46 |
| CDY11882 | Canola | nucleus | 32.9 | 41.46 |
| Bra020462.1-P | Field mustard | nucleus | 32.58 | 41.06 |
| CDY42237 | Canola | nucleus | 31.94 | 40.91 |
| PGSC0003DMT400044959 | Potato | nucleus | 29.35 | 39.39 |
| Solyc05g014590.2.1 | Tomato | nucleus | 28.71 | 38.53 |
| AT5G57150.4 | Thale cress | nucleus | 31.94 | 37.5 |
| CDY52738 | Canola | cytosol | 19.03 | 35.76 |
| CDY30182 | Canola | nucleus | 27.74 | 35.25 |
| Bra024115.1-P | Field mustard | nucleus | 27.74 | 35.25 |
| Bra011152.1-P | Field mustard | nucleus | 27.42 | 34.27 |
| CDY46719 | Canola | nucleus | 28.71 | 33.71 |
| Os04t0300600-00 | Rice | cytosol | 31.94 | 33.56 |
| AT4G29930.3 | Thale cress | nucleus | 28.39 | 33.46 |
| CDY43542 | Canola | nucleus | 28.06 | 33.08 |
| CDX68608 | Canola | nucleus | 27.74 | 32.7 |
| KRH02772 | Soybean | nucleus | 35.81 | 32.65 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 29.35 | 30.85 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 11.29 | 22.15 |
| Os04t0381700-00 | Rice | nucleus | 20.0 | 17.61 |
| Os01t0928000-01 | Rice | nucleus | 19.03 | 15.49 |
| Os03t0135700-01 | Rice | nucleus | 14.19 | 12.43 |
| Os11t0523700-01 | Rice | nucleus | 20.32 | 12.02 |
| Os02t0120500-01 | Rice | nucleus | 21.29 | 11.96 |
| Os10t0544200-01 | Rice | nucleus | 14.19 | 11.58 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4335417 | EMBL:AK242210 | ProteinID:BAF14320.1 | ProteinID:BAS88467.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| EnsemblPlantsGene:Os04g0301500 | EnsemblPlants:Os04t0301500-01 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF70 |
| UniProt:Q0JEB7 | SMART:SM00353 | SUPFAM:SSF47459 | SUPFAM:SSF55021 | UniParc:UPI00001B1A73 | RefSeq:XP_015634154.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
basic helix-loop-helix protein 006Helix-loop-helix DNA-binding domain containing protein. (Os04t0301500-01)
Coordinates
chr4:-:13466455..13468869
Molecular Weight (calculated)
32950.0 Da
IEP (calculated)
4.798
GRAVY (calculated)
-0.223
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAEMAMGES FAYYWETQRY LESEELDSMY LPTQDDSNYE SSSPDGSHSS SAPAPAAVGG DAAAAVAGSG GGMTTMMMGG GGGGGDDAGG ANKNILMERD
101: RRRKLNEKLY ALRSVVPNIT KMDKASIIKD AIEYIQRLQA EEQQMLREVA ALESAAAASA APAAANPFAG LGADEEHEYG HHHPSSSSER TKKVKRALSV
201: SSISDALLAA AAPAPPVEIQ ELRVSEVGDR VLVVSVTCSK RRDAMARVCR ALEELRLRVI TANITSVAGC LMHTLFVEVD HMDSVQMKQM VEAALSQLVA
301: TGSPLSSMSY
101: RRRKLNEKLY ALRSVVPNIT KMDKASIIKD AIEYIQRLQA EEQQMLREVA ALESAAAASA APAAANPFAG LGADEEHEYG HHHPSSSSER TKKVKRALSV
201: SSISDALLAA AAPAPPVEIQ ELRVSEVGDR VLVVSVTCSK RRDAMARVCR ALEELRLRVI TANITSVAGC LMHTLFVEVD HMDSVQMKQM VEAALSQLVA
301: TGSPLSSMSY
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.