Factsheet for Os11t0523700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049294_P001	Maize	nucleus	72.9	73.75
EES08566	Sorghum	nucleus	71.95	72.5
TraesCS7D01G308300.1	Wheat	nucleus	72.14	71.86
TraesCS7B01G211600.1	Wheat	nucleus	71.76	71.48
TraesCS7A01G311800.1	Wheat	nucleus	70.8	71.21
HORVU7Hr1G074490.3	Barley	nucleus	68.89	67.6
Zm00001d007382_P001	Maize	nucleus	56.11	56.65
KRH54112	Soybean	nucleus	43.7	49.57
KRH63854	Soybean	nucleus	42.94	48.39
Os01t0928000-01	Rice	nucleus	33.97	46.72
PGSC0003DMT400074075	Potato	nucleus	45.04	44.53
Solyc06g068870.2.1	Tomato	nucleus	45.04	44.44
VIT_01s0244g00130.t01	Wine grape	nucleus	43.13	43.8
Os10t0544200-01	Rice	nucleus	19.66	27.11
Os03t0135700-01	Rice	nucleus	16.79	24.86
Os04t0301500-01	Rice	nucleus	12.02	20.32
Os04t0300600-00	Rice	cytosol	10.88	19.32
Os04t0381700-00	Rice	nucleus	12.02	17.9
Os02t0120500-01	Rice	nucleus	16.22	15.4

Protein Annotations

MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	EntrezGene:4350609	ProteinID:ABA93991.1	ProteinID:BAF28350.2
ProteinID:BAT14228.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os11g0523700	EnsemblPlants:Os11t0523700-01	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF12	UniProt:Q2R3F6	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0000682178	RefSeq:XP_015616517.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

basic helix-loop-helix protein 002, Inducer of CBF expression 1Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116). (Os11t0523700-01)

Coordinates

chr11:+:18922046..18925254

Molecular Weight (calculated)

53532.2 Da

IEP (calculated)

5.749

GRAVY (calculated)

-0.214

Length

524 amino acids

Sequence
(BLAST)

001: MLPRFHGAMW MQDDGGGDQE HGQAAPPGQE QHHHDQHLMA LAAAAAGGAG FGAAQAPAPL LDEDWYFDAA GGGGGGAHGS MMLGLSSVHG GIGAGTSGGG
101: HGQQFSLLNM GAAAAPFDVS GFDLGIACGG VGGGGDVVSF LGGGNASNTA LLPVGNAGFL GTFGGFGTAA SQMPEFGGLA GFDMFDAGAV NTGGSSSSSS
201: AAAAAASASA HVSNTAPFSG RGKAAVLRPL DIVPPVGAQP TLFQKRALRR NAGEDDDDKK RKAAAGAGAG ALSADGADMV LDDGDDDGLS IDASGGLNYD
301: SEDARGGEDS GAKKESNANS TVTGDGKGKK KGMPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQKINDLQN ELESSPATSS
401: LPPTPTSFHP LTPTLPTLPS RIKEEICPSA LPSPTGQQPR VEVRLREGRA VNIHMFCARR PGLLLSAMRA VEGLGLDVQQ AVISCFNGFT LDIFKAEQCK
501: DGPGLLPEEI KAVLMQSAGF HTMI

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.