CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63854	Soybean	nucleus	86.8	86.24
KRH41065	Soybean	nucleus	21.43	71.22
KXG27392	Sorghum	cytosol	24.24	70.0
KRH59747	Soybean	nucleus	58.44	55.9
VIT_17s0000g00330.t01	Wine grape	nucleus	64.94	54.55
KRG94685	Soybean	nucleus	48.48	52.58
PGSC0003DMT400074075	Potato	nucleus	60.17	52.45
Solyc06g068870.2.1	Tomato	nucleus	59.96	52.17
KRH08406	Soybean	nucleus	46.75	48.65
KRH73107	Soybean	mitochondrion, nucleus	17.1	48.47
GSMUA_Achr10P...	Banana	nucleus	53.68	48.06
KRH06841	Soybean	nucleus	46.54	47.78
GSMUA_Achr11P...	Banana	nucleus	51.52	45.25
TraesCS7D01G308300.1	Wheat	nucleus	51.08	44.87
TraesCS7A01G311800.1	Wheat	nucleus	50.43	44.72
TraesCS7B01G211600.1	Wheat	nucleus	50.87	44.68
Zm00001d049294_P001	Maize	nucleus	49.78	44.4
Os11t0523700-01	Rice	nucleus	49.57	43.7
Zm00001d007382_P001	Maize	nucleus	48.27	42.97
TraesCS4A01G263300.2	Wheat	nucleus	44.81	42.42
TraesCS4B01G051500.2	Wheat	nucleus	45.24	42.22
HORVU7Hr1G074490.3	Barley	nucleus	48.48	41.95
TraesCS4D01G051600.2	Wheat	nucleus	44.81	41.4
KRG99605	Soybean	cytosol	11.69	34.18
GSMUA_Achr10P...	Banana	nucleus	9.74	32.85
KRH62159	Soybean	nucleus	22.94	32.12
KRH39520	Soybean	nucleus	22.94	31.83
KRH74438	Soybean	nucleus	22.94	31.74
KRH52870	Soybean	nucleus	22.73	31.72
KRH45479	Soybean	nucleus	21.86	31.56
KRH16156	Soybean	nucleus	17.97	30.51
KRH16909	Soybean	nucleus	21.86	30.06
KRH72519	Soybean	nucleus	21.43	29.73
CDX99537	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	12.34	28.22
KRH37338	Soybean	nucleus	14.07	26.64
KRH12334	Soybean	nucleus	13.2	25.1
KRH26533	Soybean	nucleus	16.02	22.98
KRH19109	Soybean	nucleus	11.26	22.51
KRH22827	Soybean	nucleus	15.37	21.98
KRH25108	Soybean	nucleus	12.99	21.05
KRH30560	Soybean	nucleus	13.2	19.55
KRH02772	Soybean	nucleus	12.77	17.35
KRH36073	Soybean	nucleus	20.78	16.81
KRG90676	Soybean	extracellular, vacuole	20.13	16.12
KRH45665	Soybean	nucleus	15.58	14.52

Protein Annotations

EntrezGene:100217341	MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	EMBL:ACUP02003493	UniProt:B8XJY8
ncoils:Coil	EMBL:FJ393226	EnsemblPlantsGene:GLYMA_06G165000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH54112	ProteinID:KRH54112
ProteinID:KRH54112.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0001895390	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:13675864..13680262

Molecular Weight (calculated)

51326.5 Da

IEP (calculated)

6.658

GRAVY (calculated)

-0.647

Length

462 amino acids

Sequence
(BLAST)

001: MMSRINNNGV AWMGEREDEN SRNHNIIPTD TTTTNTGFVE TTNNDLGSLC AFKPMLDVDD EWYNNITNHH HHHHHHHDMT FDPDNLLLHA ATAVDSSSSC
101: SPYFFPPNPK PPFLVNPFDM GFLDPQASSS PSLPLLPEST HFTPPHTTTT AFAGFQSRLQ ESGSSKSLFL RPLESLPPSG AQPTLFQKRA ALRKNMEGSD
201: NNKKKRKEKE KDEEVEDLSF DGSGLNYDSD DLTESNYNNV SEGNTGKNGG VSSNANSTVI TGLDQKGKKK GMPAKNLMAE RRRRKKLNDR LYMLRSVVPK
301: ISKMDRASIL GDAIEYLKEL LQRINDLHNE LESTPVGSSL TPVSSFHPLT PTPPTLPSRI KEELCPSSLP SPNGQPARVE VRLREGRAVN IHMFCARKPS
401: LLLSTMRALD NLGLDIQQAV ISCFNGFAMD IFRAEQCKEG QDVHPEQIKA VLLDSAGYNG MM

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.