Factsheet for Zm00001d049294_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08566	Sorghum	nucleus	94.02	93.65
Os11t0523700-01	Rice	nucleus	73.75	72.9
TraesCS7D01G308300.1	Wheat	nucleus	72.2	71.1
TraesCS7B01G211600.1	Wheat	nucleus	71.81	70.72
TraesCS7A01G311800.1	Wheat	nucleus	70.85	70.44
HORVU7Hr1G074490.3	Barley	nucleus	70.08	67.98
Zm00001d007382_P001	Maize	nucleus	65.83	65.7
KRH54112	Soybean	nucleus	44.4	49.78
KRH63854	Soybean	nucleus	42.86	47.74
VIT_01s0244g00130.t01	Wine grape	nucleus	44.02	44.19
PGSC0003DMT400074075	Potato	nucleus	44.21	43.21
Solyc06g068870.2.1	Tomato	nucleus	44.02	42.94
Zm00001d042263_P001	Maize	nucleus	33.4	41.39
Zm00001d036382_P001	Maize	nucleus	17.76	29.11
Zm00001d014814_P002	Maize	plastid	16.8	23.71
Zm00001d027546_P001	Maize	nucleus	16.8	23.64
Zm00001d025141_P003	Maize	nucleus	11.2	22.14
Zm00001d024522_P001	Maize	nucleus	11.0	22.09
Zm00001d004095_P001	Maize	nucleus	11.78	19.87
Zm00001d004007_P001	Maize	nucleus	11.97	17.32
Zm00001d025205_P001	Maize	nucleus	11.97	16.27
Zm00001d053895_P001	Maize	nucleus	18.15	15.04

Protein Annotations

MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	ProteinID:AQK49999.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:K7UAI8	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945
PANTHER:PTHR31945:SF12	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000220F3FA	EnsemblPlantsGene:Zm00001d049294	EnsemblPlants:Zm00001d049294_P001
EnsemblPlants:Zm00001d049294_T001	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

bHLH-transcription factor 130Putative HLH DNA-binding domain superfamily protein

Coordinates

chr4:+:24896748..24900567

Molecular Weight (calculated)

53271.0 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.229

Length

518 amino acids

Sequence
(BLAST)

001: MLPPFGNPLW VPEDVDDQQQ HHAPPPTPMG LGPGQGHDEQ NLLALASAAA MGAGGIFSSP AVLDDDWYFD PVAAAAAAGA QGQLLLAPPG PAPDAGSQMF
101: SLFNVGGAAT FDVHGFDLGL GGGGGGDLVP FAGAGNASNS ASFSLVPAGN AGGFLGSFGG FGTAPAQMPD FGGLGGFDMF NSGAGSSSAA PPPPASVSLT
201: APFSGRGKAA VLRPLEIFPP VGAQPTLFQK RALRRNAGEE DDDKKRKVEA VAAAAGASSG GGGDTVLDDA DDDDGGSIDA SGLNYDSEDA RGVEDSGKKD
301: GKDSNANSTV TGGATGDGKG KRKGLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQKINDL QNDLESSPST ASLPPTPTSF
401: HPLTPTLPTL PSRVKEELCP SALPSPTSQQ PRVEVRMREG RAVNIHMLCA RRPGLLLSAM RAIEGLGLDV QQAVISCFNG FSLDIFKAEL CKEGPGLLPE
501: EIKSVLLQSA GFHGGVMP

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.