Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004007_P001 | |
| Zm00001d011847_P001 | |
| Zm00001d025205_P001 | |
| Zm00001d042062_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG26070 | Sorghum | nucleus | 81.56 | 79.78 |
| Zm00001d025205_P001 | Maize | nucleus | 80.73 | 75.85 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 55.31 | 58.58 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 55.31 | 58.41 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 55.87 | 58.31 |
| Os04t0381700-00 | Rice | nucleus | 55.59 | 56.53 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 46.93 | 54.9 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 38.55 | 45.39 |
| KRH22827 | Soybean | nucleus | 29.61 | 32.82 |
| Bra000495.1-P | Field mustard | nucleus | 27.93 | 32.47 |
| CDY31199 | Canola | nucleus | 28.21 | 32.27 |
| Solyc06g051550.2.1 | Tomato | cytosol | 27.37 | 32.24 |
| PGSC0003DMT400048941 | Potato | nucleus | 27.65 | 31.73 |
| CDX83286 | Canola | nucleus | 27.65 | 31.63 |
| AT2G28160.1 | Thale cress | nucleus | 27.65 | 31.13 |
| KRH26533 | Soybean | nucleus | 27.93 | 31.06 |
| KRH30560 | Soybean | nucleus | 26.82 | 30.77 |
| CDY04543 | Canola | nucleus | 27.09 | 30.7 |
| CDX71377 | Canola | nucleus | 26.82 | 30.38 |
| Bra011972.1-P | Field mustard | nucleus | 26.54 | 30.06 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 26.26 | 29.94 |
| CDY30505 | Canola | nucleus | 25.98 | 29.62 |
| Bra034392.1-P | Field mustard | nucleus | 25.98 | 29.43 |
| CDX77160 | Canola | nucleus | 25.98 | 29.43 |
| KRH25108 | Soybean | nucleus | 22.35 | 28.07 |
| Zm00001d024522_P001 | Maize | nucleus | 16.48 | 22.87 |
| Zm00001d025141_P003 | Maize | nucleus | 14.8 | 20.23 |
| Zm00001d004095_P001 | Maize | nucleus | 17.04 | 19.87 |
| Zm00001d036382_P001 | Maize | nucleus | 13.41 | 15.19 |
| Zm00001d027546_P001 | Maize | nucleus | 15.08 | 14.67 |
| Zm00001d014814_P002 | Maize | plastid | 13.97 | 13.62 |
| Zm00001d042263_P001 | Maize | nucleus | 15.08 | 12.92 |
| Zm00001d049294_P001 | Maize | nucleus | 17.32 | 11.97 |
| Zm00001d007382_P001 | Maize | nucleus | 16.76 | 11.56 |
| Zm00001d053895_P001 | Maize | nucleus | 17.6 | 10.08 |
Protein Annotations
| EntrezGene:103647221 | MapMan:15.5.32 | MapMan:25.4.1.5 | Gene3D:4.10.280.10 | UniProt:A0A096SYH2 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | ProteinID:ONM18134.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000221B2FE | EnsemblPlantsGene:Zm00001d004007 | EnsemblPlants:Zm00001d004007_P001 | EnsemblPlants:Zm00001d004007_T001 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
bHLH-transcription factor 37Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
Coordinates
chr2:-:75054959..75056736
Molecular Weight (calculated)
38385.9 Da
IEP (calculated)
6.022
GRAVY (calculated)
-0.602
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMEHQLLHL ERFMASSPGF FTVDSGQDPA HFPNGGLFVE QVGATGGVGG DDGGWVEDLM QLGEELFGGR GDANGTDDGM GDDHYYQQWQ CDDGGSPDGG
101: PPPSVSLDGD ASPPSGEQEQ GTVELASERH PHREAEDGDD DVLGATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKMDKASIIA DAVVYVKNLQ
201: AHARKLKEEV AALEARPRSP TGQHSGPAGA GRRRHQQQQQ ERRRDAGRSA GSGARVTHVG AVQVGEGRFF VTVECERRDG VAAPLCAAAE SLACFRVETS
301: SVGGRSGPDR VVSMSTLTLK GRGQLGDAAA IGEASVKLWM MAALVKEGFR PAATVQIS
101: PPPSVSLDGD ASPPSGEQEQ GTVELASERH PHREAEDGDD DVLGATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKMDKASIIA DAVVYVKNLQ
201: AHARKLKEEV AALEARPRSP TGQHSGPAGA GRRRHQQQQQ ERRRDAGRSA GSGARVTHVG AVQVGEGRFF VTVECERRDG VAAPLCAAAE SLACFRVETS
301: SVGGRSGPDR VVSMSTLTLK GRGQLGDAAA IGEASVKLWM MAALVKEGFR PAATVQIS
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.