Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g051550.2.1 | |
| Solyc10g079650.1.1 | |
| Solyc10g079660.1.1 | |
| Solyc10g079680.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048941 | Potato | nucleus | 94.08 | 91.67 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 52.63 | 50.96 |
| Bra000495.1-P | Field mustard | nucleus | 46.05 | 45.45 |
| CDY31199 | Canola | nucleus | 46.71 | 45.37 |
| CDX83286 | Canola | nucleus | 46.38 | 45.05 |
| AT2G28160.1 | Thale cress | nucleus | 47.04 | 44.97 |
| CDX71377 | Canola | nucleus | 46.38 | 44.62 |
| CDY04543 | Canola | nucleus | 46.38 | 44.62 |
| Bra011972.1-P | Field mustard | nucleus | 46.05 | 44.3 |
| Bra034392.1-P | Field mustard | nucleus | 45.07 | 43.35 |
| CDY30505 | Canola | nucleus | 44.74 | 43.31 |
| CDX77160 | Canola | nucleus | 44.74 | 43.04 |
| KRH22827 | Soybean | nucleus | 45.07 | 42.41 |
| KRH26533 | Soybean | nucleus | 43.75 | 41.3 |
| KRH25108 | Soybean | nucleus | 37.17 | 39.65 |
| KRH30560 | Soybean | nucleus | 40.46 | 39.42 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 32.24 | 32.24 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 28.95 | 28.76 |
| Os04t0381700-00 | Rice | nucleus | 31.91 | 27.56 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 30.59 | 27.51 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 30.59 | 27.43 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 30.92 | 27.41 |
| Zm00001d004007_P001 | Maize | nucleus | 32.24 | 27.37 |
| KXG26070 | Sorghum | nucleus | 32.57 | 27.05 |
| Zm00001d025205_P001 | Maize | nucleus | 32.57 | 25.98 |
| Solyc05g014590.2.1 | Tomato | nucleus | 19.08 | 25.11 |
| Solyc07g018010.2.1 | Tomato | nucleus | 19.08 | 22.92 |
| Solyc02g063430.2.1 | Tomato | nucleus | 18.09 | 17.13 |
| Solyc12g088130.1.1 | Tomato | nucleus | 18.09 | 16.37 |
| Solyc02g091690.2.1 | Tomato | nucleus | 16.12 | 14.89 |
| Solyc05g005300.2.1 | Tomato | nucleus | 20.07 | 12.66 |
| Solyc06g068870.2.1 | Tomato | nucleus | 20.07 | 11.49 |
| Solyc03g118310.2.1 | Tomato | nucleus | 18.75 | 10.8 |
| Solyc08g062780.1.1 | Tomato | nucleus | 21.05 | 10.74 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.5 | Gene3D:4.10.280.10 | ProteinID:AAW22875.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006810 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009719 |
| GO:GO:0009987 | GO:GO:0010039 | GO:GO:0034756 | GO:GO:0046983 | GO:GO:0071281 | GO:GO:0071369 |
| GO:GO:0071732 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | UniProt:Q5GA67 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc06g051550.2 |
| EnsemblPlants:Solyc06g051550.2.1 | UniParc:UPI00004C60F5 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BHLH transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q5GA67]
Coordinates
chr6:-:35057313..35059226
Molecular Weight (calculated)
34405.7 Da
IEP (calculated)
4.723
GRAVY (calculated)
-0.396
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MESGNASMEN NNVNDIGLIN FLDEDNFEQF IELIRGETAD PIVNFCPNYD CEHMTGCFSA ANAQFEPILS SMDFYDTTLP DPISLYNCEI KLDNNDDEDD
101: DESSGTTATT KMTPTSKGTR TDRSRTLISE RKRRGRMKEK LYALRSLVPN ITKMDKASII GDAILYVQGL QTKAKKLKVE IAEFESSSGI FQNAKKMNFT
201: TYYPAIKRIT KMDINQVEEK GFYVRLICNK GRHIAASLFK ALESLNGFNV QTSNLATSTN DYIFTFTLYV RECHEVDINF GNLKLWIASA FLNQGFDFET
301: SPLV
101: DESSGTTATT KMTPTSKGTR TDRSRTLISE RKRRGRMKEK LYALRSLVPN ITKMDKASII GDAILYVQGL QTKAKKLKVE IAEFESSSGI FQNAKKMNFT
201: TYYPAIKRIT KMDINQVEEK GFYVRLICNK GRHIAASLFK ALESLNGFNV QTSNLATSTN DYIFTFTLYV RECHEVDINF GNLKLWIASA FLNQGFDFET
301: SPLV
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.