Factsheet for AT2G28160.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04543	Canola	nucleus	88.36	88.92
Bra011972.1-P	Field mustard	nucleus	88.05	88.61
CDX71377	Canola	nucleus	87.11	87.66
Bra034392.1-P	Field mustard	nucleus	85.53	86.08
CDX77160	Canola	nucleus	85.53	86.08
CDY31199	Canola	nucleus	84.59	85.94
CDY30505	Canola	nucleus	84.59	85.67
CDX83286	Canola	nucleus	83.65	84.98
Bra000495.1-P	Field mustard	nucleus	82.08	84.74
KRH22827	Soybean	nucleus	54.09	53.25
VIT_06s0061g00720.t01	Wine grape	nucleus	50.94	51.59
KRH25108	Soybean	nucleus	44.97	50.18
KRH26533	Soybean	nucleus	50.0	49.38
KRH30560	Soybean	nucleus	48.43	49.36
PGSC0003DMT400048941	Potato	nucleus	47.8	48.72
Solyc06g051550.2.1	Tomato	cytosol	44.97	47.04
GSMUA_Achr6P27600_001	Banana	nucleus	31.13	32.57
TraesCS2A01G281200.1	Wheat	nucleus	31.45	29.59
HORVU2Hr1G068960.2	Barley	nucleus	28.3	29.41
TraesCS2D01G280100.1	Wheat	nucleus	31.13	29.2
TraesCS2B01G298600.1	Wheat	nucleus	31.45	29.15
KXG26070	Sorghum	nucleus	32.39	28.14
Zm00001d004007_P001	Maize	nucleus	31.13	27.65
Os04t0381700-00	Rice	nucleus	30.19	27.27
Zm00001d025205_P001	Maize	nucleus	31.45	26.25
AT4G29930.3	Thale cress	nucleus	18.87	22.81
AT5G57150.4	Thale cress	nucleus	18.55	22.35
AT5G10570.1	Thale cress	nucleus	17.61	17.78
AT5G65640.1	Thale cress	nucleus	18.55	16.81
AT1G10610.1	Thale cress	nucleus	17.61	12.7
AT2G16910.1	Thale cress	nucleus	22.01	12.26
AT1G12860.1	Thale cress	nucleus	17.3	12.22
AT3G26744.1	Thale cress	nucleus	17.92	11.54

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.5	Gene3D:4.10.280.10	EntrezGene:817362	ProteinID:AAC98450.1	EMBL:AB493568
ProteinID:AEC08086.1	EMBL:AF488570	ArrayExpress:AT2G28160	EnsemblPlantsGene:AT2G28160	RefSeq:AT2G28160	TAIR:AT2G28160
RefSeq:AT2G28160-TAIR-G	EnsemblPlants:AT2G28160.1	TAIR:AT2G28160.1	EMBL:BT026446	UniProt:C0SV65	ncoils:Coil
Symbol:FIT1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009987	GO:GO:0010039	GO:GO:0034756	GO:GO:0046983
GO:GO:0071281	GO:GO:0071369	GO:GO:0071732	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
RefSeq:NP_850114.1	PFAM:PF00010	PO:PO:0000293	PO:PO:0009005	PFscan:PS50888	PANTHER:PTHR31945
PANTHER:PTHR31945:SF17	UniProt:Q0V7X4	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000162391	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]

Coordinates

chr2:+:12004658..12006276

Molecular Weight (calculated)

35522.4 Da

IEP (calculated)

4.358

GRAVY (calculated)

-0.561

Length

318 amino acids

Sequence
(BLAST)

001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.