Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31399 | Canola | nucleus | 89.14 | 89.77 |
| Bra002004.1-P | Field mustard | nucleus | 88.62 | 89.24 |
| CDX71316 | Canola | nucleus | 88.27 | 88.73 |
| CDY02227 | Canola | nucleus | 88.09 | 88.56 |
| Bra013041.1-P | Field mustard | nucleus | 87.92 | 88.38 |
| CDX89760 | Canola | nucleus | 87.57 | 88.03 |
| VIT_01s0127g00860.t01 | Wine grape | nucleus | 48.69 | 45.42 |
| KRH36073 | Soybean | nucleus | 43.43 | 43.43 |
| GSMUA_Achr1P07450_001 | Banana | nucleus, plastid | 22.24 | 43.34 |
| VIT_03s0038g02540.t01 | Wine grape | nucleus | 47.64 | 41.91 |
| KRG90676 | Soybean | extracellular, vacuole | 42.03 | 41.59 |
| Solyc08g062780.1.1 | Tomato | nucleus | 42.91 | 41.11 |
| PGSC0003DMT400021165 | Potato | nucleus | 30.47 | 40.0 |
| GSMUA_Achr3P00640_001 | Banana | nucleus | 20.84 | 39.93 |
| Os02t0120500-01 | Rice | nucleus | 32.4 | 33.51 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 31.87 | 32.62 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 31.87 | 32.62 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 31.52 | 32.55 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 31.35 | 32.55 |
| TraesCS6D01G069400.1 | Wheat | nucleus | 31.52 | 32.49 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 31.17 | 32.19 |
| TraesCS6D01G069300.1 | Wheat | nucleus | 31.17 | 31.96 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 30.65 | 31.59 |
| KXG29315 | Sorghum | nucleus | 31.0 | 31.0 |
| GSMUA_Achr1P07330_001 | Banana | nucleus | 22.59 | 30.57 |
| AT1G10610.1 | Thale cress | nucleus | 23.12 | 29.93 |
| Zm00001d053895_P001 | Maize | nucleus | 30.12 | 27.52 |
| AT5G10570.1 | Thale cress | nucleus | 14.19 | 25.71 |
| AT5G57150.4 | Thale cress | nucleus | 11.38 | 24.62 |
| AT5G65640.1 | Thale cress | nucleus | 14.89 | 24.22 |
| AT4G29930.3 | Thale cress | nucleus | 10.86 | 23.57 |
| AT2G28160.1 | Thale cress | nucleus | 12.26 | 22.01 |
| AT3G26744.1 | Thale cress | nucleus | 16.29 | 18.83 |
| AT1G12860.1 | Thale cress | nucleus | 14.71 | 18.67 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:816194 | ProteinID:AAC64222.1 | ProteinID:AEC06553.1 | EMBL:AF488565 |
| Symbol:AMS | ArrayExpress:AT2G16910 | EnsemblPlantsGene:AT2G16910 | RefSeq:AT2G16910 | TAIR:AT2G16910 | RefSeq:AT2G16910-TAIR-G |
| EnsemblPlants:AT2G16910.1 | TAIR:AT2G16910.1 | Unigene:At.70395 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000978 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009555 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0046983 | GO:GO:0048653 | GO:GO:0048654 | GO:GO:0048657 | GO:GO:0048658 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | RefSeq:NP_179283.2 | PFAM:PF00010 | PFAM:PF14215 |
| PO:PO:0001078 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0025022 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF11 | UniProt:Q9ZVX2 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000162338 | InterPro:bHLH_dom | SEG:seg | : |
Description
AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
Coordinates
chr2:+:7331721..7334254
Molecular Weight (calculated)
64882.9 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.754
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.