CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053895_P001	Maize	nucleus	85.29	77.92
HORVU6Hr1G012760.1	Barley	nucleus	60.07	61.47
HORVU6Hr1G012730.1	Barley	nucleus	60.07	61.47
TraesCS6A01G071300.1	Wheat	nucleus	59.02	61.27
TraesCS6B01G095600.1	Wheat	nucleus	58.84	60.76
TraesCS6A01G071200.1	Wheat	nucleus	58.84	60.65
TraesCS6B01G095700.1	Wheat	nucleus	58.67	60.58
TraesCS6D01G069300.1	Wheat	nucleus	59.02	60.5
TraesCS6D01G069400.1	Wheat	nucleus	58.67	60.47
Os02t0120500-01	Rice	nucleus	57.97	59.96
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	21.37	41.64
GSMUA_Achr3P00640_001	Banana	nucleus	18.56	35.57
GSMUA_Achr1P07330_001	Banana	nucleus	23.47	31.75
CDY02227	Canola	nucleus	31.0	31.16
Bra013041.1-P	Field mustard	nucleus	31.0	31.16
VIT_01s0127g00860.t01	Wine grape	nucleus	33.27	31.05
AT2G16910.1	Thale cress	nucleus	31.0	31.0
CDX89760	Canola	nucleus	30.82	30.99
CDY31399	Canola	nucleus	30.65	30.86
Bra002004.1-P	Field mustard	nucleus	30.3	30.51
CDX71316	Canola	nucleus	30.3	30.46
KRH36073	Soybean	nucleus	29.95	29.95
VIT_03s0038g02540.t01	Wine grape	nucleus	33.63	29.58
Solyc08g062780.1.1	Tomato	nucleus	30.82	29.53
KRG90676	Soybean	extracellular, vacuole	29.77	29.46
PGSC0003DMT400021165	Potato	nucleus	22.42	29.43
KXG27392	Sorghum	cytosol	7.01	25.0
EES14602	Sorghum	nucleus	11.03	21.88
EES05013	Sorghum	nucleus	10.51	21.28
EES04142	Sorghum	nucleus	13.13	19.95
EER88977	Sorghum	plastid	12.43	18.59
EER92904	Sorghum	nucleus	12.08	18.5
EES08566	Sorghum	nucleus	16.46	18.08
KXG26070	Sorghum	nucleus	11.38	17.76

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A194YNA4	GO:GO:0000003	GO:GO:0000978	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555
GO:GO:0009791	GO:GO:0009908	GO:GO:0046983	GO:GO:0048658	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	ProteinID:KXG29314.1	EnsemblPlants:KXG29315	ProteinID:KXG29315	ProteinID:KXG29315.1	ProteinID:OQU84236.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	EnsemblPlantsGene:SORBI_3004G017500
SUPFAM:SSF47459	UniParc:UPI0007F2BFB7	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:1370526..1374003

Molecular Weight (calculated)

59317.4 Da

IEP (calculated)

4.282

GRAVY (calculated)

-0.251

Length

571 amino acids

Sequence
(BLAST)

001: MGGGGHSCVA AAGDGAGASM EAALRTLVGV DAWDYCIYWR LSPDQRFLEM TGFCCSSEFE AQLSALGDLP PSIQLDSSSA GMHAEAMVSN QPIWQSSRVS
101: ELQTSYSSEP IGSGGGPRTR LLVPVAGGLV ELFAARYMAE EEQMAELVMA QCGVPGGAEA GEGGGGVHAW QPGFAWDGAA DASRGMMYGG AAVPPSLGLF
201: DAAGSVAADP FQAVVVQQAP GAGGGGGVDD AGWQYAAAAA AAGSELAAVQ QEPQPPQPQP RGADSGSEGS DMQVDPEDDG DGDGDVDAQG RGGGGGGGKG
301: GGKRQQCKNL VAERRRRKKL NDRLYKLRSL VPNISKMDRA SILGDAIDYI VGLQNQVKAL QDELEDPADG GAPDVLLDHP PPASLVGLEN DDSPRTSHHL
401: PLAGSKRSRA AVQAAEEEKG HDMEPQVEVR QVEANEFFLQ MLCERKPGRF VQIMDSIAAL GLEVTNVNVT SHESLVLNVF RAARRDSEVA VQADRVRDSL
501: LEVTREPYGV WSSAAPPVGV GMSGGGIVDV KLDGVDVKLD GIIDGQAAPG VAVAVGEDQY GGYNHLLQYL A

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.