Factsheet for Solyc08g062780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021165	Potato	nucleus	68.96	94.48
VIT_01s0127g00860.t01	Wine grape	nucleus	49.33	48.04
KRH36073	Soybean	nucleus	42.95	44.83
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	21.98	44.71
VIT_03s0038g02540.t01	Wine grape	nucleus	48.49	44.53
AT2G16910.1	Thale cress	nucleus	41.11	42.91
Bra002004.1-P	Field mustard	nucleus	40.6	42.68
CDY31399	Canola	nucleus	40.44	42.5
KRG90676	Soybean	extracellular, vacuole	40.94	42.29
CDX71316	Canola	nucleus	40.1	42.08
CDX89760	Canola	nucleus	38.93	40.85
CDY02227	Canola	nucleus	38.76	40.67
Bra013041.1-P	Field mustard	nucleus	38.76	40.67
GSMUA_Achr3P00640_001	Banana	nucleus	20.3	40.6
GSMUA_Achr1P07330_001	Banana	nucleus	24.33	34.36
Os02t0120500-01	Rice	nucleus	31.04	33.51
TraesCS6A01G071300.1	Wheat	nucleus	30.54	33.09
TraesCS6B01G095600.1	Wheat	nucleus	30.37	32.73
TraesCS6D01G069400.1	Wheat	nucleus	30.37	32.67
TraesCS6B01G095700.1	Wheat	nucleus	30.03	32.37
TraesCS6D01G069300.1	Wheat	nucleus	30.2	32.32
TraesCS6A01G071200.1	Wheat	nucleus	29.7	31.95
HORVU6Hr1G012760.1	Barley	nucleus	29.87	31.9
HORVU6Hr1G012730.1	Barley	nucleus	29.87	31.9
KXG29315	Sorghum	nucleus	29.53	30.82
Zm00001d053895_P001	Maize	nucleus	30.2	28.8
Solyc05g005300.2.1	Tomato	nucleus	22.82	28.22
Solyc02g063430.2.1	Tomato	nucleus	13.09	24.3
Solyc07g018010.2.1	Tomato	nucleus	10.23	24.11
Solyc02g091690.2.1	Tomato	nucleus	12.42	22.49
Solyc06g051550.2.1	Tomato	cytosol	10.74	21.05
Solyc05g014590.2.1	Tomato	nucleus	8.05	20.78
Solyc12g088130.1.1	Tomato	nucleus	11.41	20.24
Solyc06g068870.2.1	Tomato	nucleus	15.94	17.89
Solyc03g118310.2.1	Tomato	nucleus	15.27	17.23

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000978	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	GO:GO:0046983
GO:GO:0048653	GO:GO:0048654	GO:GO:0048657	GO:GO:0048658	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4CL63	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc08g062780.1	EnsemblPlants:Solyc08g062780.1.1
UniParc:UPI000276B2BA	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

Transcription factor ABORTED MICROSPORES [Source:Projected from Arabidopsis thaliana (AT2G16910) UniProtKB/Swiss-Prot;Acc:Q9ZVX2]

Coordinates

chr8:+:51899398..51902870

Molecular Weight (calculated)

67681.5 Da

IEP (calculated)

5.889

GRAVY (calculated)

-0.891

Length

596 amino acids

Sequence
(BLAST)

001: MERLRPIMSL KGWDYCVLWK LSEDQRFLEW ICCCCGGAEK NMHGCGQEIF FPDSSTSTCR DVMFQHPTTT ACNLLAQVPP SLALDCGVYA QTLLSNQAKW
101: MNFVPFSESN ISNEIMGTRA LIPSPLGLLE LFSTQQLAED EKVIEFVSAQ CNIYLEQQAM MNSTFSNGVE ENNTSKPFPT EGERDRDDHI KDSQNHYKQR
201: VSPAATSDHL SFDFPLKRKQ LDSCSMNFLP PFSTYSTPEV DNNTGGNMLF DQSTSDMTHF SENRYMSEMD AYLQKQMMRS SSTQAGIDDE SIKHDNGRSN
301: SGSDSDQNEE EDDPKYRRRN GKGPQSKNLM AERKRRKKLN ERLYALRALV PKISKLDRAS ILGDAIEYVM ELEKQVKDLQ LEVEEHSDDD GTGGGRNSDQ
401: IHPVVLSHNG TKNRPKSDNG KLTNGSQREI STNSNGSTDP SRKNQDVEEN DKLQQMEPQV EVAQLDGNEF FVKVFREHKA GGFVRTLEAL NSLGLEVTNV
501: NATRHTCLVS SIFKVEQKRD NEMVQADHVR DTLLELTRNP SRGWSEMGRA SSDNINNNNA NGTTDYHQHQ LHDHHLDNNN QHKQTNSHHF HTHHHH

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.