Factsheet for Solyc03g118310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036951	Potato	nucleus	89.77	86.03
CDY19416	Canola	nucleus	26.14	74.59
CDX98033	Canola	nucleus	25.95	74.05
GSMUA_Achr6P08070_001	Banana	nucleus	29.92	72.48
Solyc06g068870.2.1	Tomato	nucleus	53.98	53.67
Bra034246.1-P	Field mustard	nucleus	39.39	49.76
CDY28529	Canola	nucleus	41.1	49.43
Bra032947.1-P	Field mustard	nucleus	41.1	49.09
VIT_14s0068g01200.t01	Wine grape	nucleus	49.43	48.51
AT3G26744.1	Thale cress	nucleus	45.27	48.38
AT1G12860.1	Thale cress	nucleus	41.1	48.22
EES04142	Sorghum	nucleus	33.71	47.34
Bra025226.1-P	Field mustard	nucleus	44.51	47.28
KRG94685	Soybean	nucleus	38.07	47.18
Bra019794.1-P	Field mustard	nucleus	37.88	47.06
HORVU3Hr1G096460.5	Barley	nucleus	33.71	46.97
TraesCS3B01G476000.1	Wheat	nucleus	33.71	46.97
TraesCS3D01G434900.1	Wheat	nucleus	33.71	46.72
TraesCS3A01G442200.1	Wheat	nucleus	33.52	46.21
CDY34601	Canola	nucleus	38.83	46.17
CDY48974	Canola	nucleus	41.48	45.72
Os01t0928000-01	Rice	nucleus	32.95	45.67
CDY21073	Canola	nucleus	37.12	45.48
Bra016749.1-P	Field mustard	nucleus	37.12	45.27
KRH08406	Soybean	nucleus	37.12	44.14
KRH06841	Soybean	nucleus	36.93	43.33
GSMUA_Achr10P...	Banana	nucleus	41.67	43.22
Zm00001d042263_P001	Maize	nucleus	33.33	42.11
Solyc02g063430.2.1	Tomato	nucleus	18.56	30.53
Solyc02g091690.2.1	Tomato	nucleus	18.56	29.79
Solyc12g088130.1.1	Tomato	nucleus	18.94	29.76
Solyc07g018010.2.1	Tomato	nucleus	12.69	26.48
Solyc05g014590.2.1	Tomato	nucleus	9.47	21.64
Solyc06g051550.2.1	Tomato	cytosol	10.8	18.75
Solyc05g005300.2.1	Tomato	nucleus	14.96	16.39
Solyc08g062780.1.1	Tomato	nucleus	17.23	15.27

Protein Annotations

EnsemblPlants:Solyc03g118310.2.1	EnsemblPlantsGene:Solyc03g118310.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR31945
PANTHER:PTHR31945:SF2	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002767C32	UniProt:K4BLY2	MapMan:15.5.32	MapMan:26.4.3.4.1	:	:

Description

No Description!

Coordinates

chr3:-:67224387..67226932

Molecular Weight (calculated)

56932.5 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.605

Length

528 amino acids

Sequence
(BLAST)

001: MGWIDGKEDG GTGSWVNQNN ENHQQNNGGF PNENHQLNNG GFTNFQGMVD DGGVDWFMGG GDSNNHHINN NNNNGGGGGG GSNMQSHISY STSFTEAENS
101: LLLQPVDSSA SCSPVSGNVF NNIDPSQVNF FMPQKSTIPS SLTGLSNNPM DNSFNLGMLN QAGNGMMNTG YHHLGSPNQM GTNNLSSYTQ FSSPNLLQLP
201: QVAGGYSSMG FGANNSANGN TLFLNRSRTH KPLDNFASIG AQPTLFQKRI AKNLVSNGEN LGTEIGQSSS NLTDKKRKSS MNDEFEDVSM DGTLNYDSDE
301: FMDISNKMED GIKIGDSSNA ASTVSGADQK GKKKGPPAKN LMAERRRRKK LNDRLYMLRS VVPKITKMDR ASILGDAIKY LKELLHDINE LHNELESTPA
401: NNSSLSPATS FHPLTPTASA LPSRIKEELV PSPLSSPTGQ PARIEVRVRE GKAVNIHMIC SRKPGVLLST MKALDSLGLD IQQAVISCFN GFVLDVFRAE
501: QSNEGQEMHP DQIKAVLMET AGFQGGTI

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.