Factsheet for PGSC0003DMT400036951

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118310.2.1	Tomato	nucleus	86.03	89.77
CDY19416	Canola	nucleus	24.5	72.97
GSMUA_Achr6P08070_001	Banana	nucleus	28.86	72.94
CDX98033	Canola	nucleus	24.32	72.43
PGSC0003DMT400074075	Potato	nucleus	54.08	56.23
Bra034246.1-P	Field mustard	nucleus	38.48	50.72
CDY28529	Canola	nucleus	39.56	49.66
Bra032947.1-P	Field mustard	nucleus	39.75	49.55
AT3G26744.1	Thale cress	nucleus	43.92	48.99
VIT_14s0068g01200.t01	Wine grape	nucleus	47.73	48.88
KRG94685	Soybean	nucleus	37.21	48.12
AT1G12860.1	Thale cress	nucleus	39.02	47.78
Bra025226.1-P	Field mustard	nucleus	42.83	47.48
Bra019794.1-P	Field mustard	nucleus	36.48	47.29
HORVU3Hr1G096460.5	Barley	nucleus	31.76	46.17
TraesCS3B01G476000.1	Wheat	nucleus	31.76	46.17
CDY34601	Canola	nucleus	37.21	46.17
CDY48974	Canola	nucleus	40.11	46.14
TraesCS3D01G434900.1	Wheat	nucleus	31.76	45.93
TraesCS3A01G442200.1	Wheat	nucleus	31.58	45.43
CDY21073	Canola	nucleus	35.39	45.24
Bra016749.1-P	Field mustard	nucleus	35.39	45.03
EES04142	Sorghum	nucleus	30.67	44.95
KRH08406	Soybean	nucleus	35.93	44.59
KRH06841	Soybean	nucleus	36.12	44.22
Os01t0928000-01	Rice	nucleus	30.49	44.09
GSMUA_Achr10P...	Banana	nucleus	40.29	43.61
Zm00001d042263_P001	Maize	nucleus	30.31	39.95
PGSC0003DMT400026937	Potato	nucleus	18.69	31.6
PGSC0003DMT400016360	Potato	nucleus	19.24	31.36
PGSC0003DMT400078675	Potato	nucleus	19.06	31.34
PGSC0003DMT400005209	Potato	nucleus	12.7	27.13
PGSC0003DMT400010463	Potato	nucleus	11.98	26.19
PGSC0003DMT400044959	Potato	nucleus	10.16	24.24
PGSC0003DMT400048941	Potato	nucleus	10.89	19.23
PGSC0003DMT400021165	Potato	nucleus	13.43	17.01

Protein Annotations

EntrezGene:102582692	MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1B4J7	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400014246	PGSC:PGSC0003DMG400014246	EnsemblPlants:PGSC0003DMT400036951	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF2	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002950B50	RefSeq:XP_006341483.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BHLH domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014246]

Coordinates

chr3:-:57881899..57884424

Molecular Weight (calculated)

59477.3 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.611

Length

551 amino acids

Sequence
(BLAST)

001: MMPGINGMGW MDGKEDGGTG AWVNQNNGNN ENHQQNNGGF PNENHQQNNG GFSNFQAMVD DGGVEWFMGG AANNNHHINN NNNGGGGGNM QSHISYSTSF
101: TEAENNLLLQ PVDSSSSCSP VSGSVFNNLD PSQVNFFMPQ KSTIPPSLTG LSNNPLESSF NSLGAMNQGG NGMINTGFHH LGSQNQLGTN NLSSYTQFSS
201: PNLLQIPQVA GGYSSMGFGD NNSANGNTLF LNRSRTHKPL DNFASIGAQP TLFQKRIAKN LGNHGENLGG LGTEIGQSSS NLKGFDKNKE WNDSKRKFSI
301: NDEFEDVSMD GTLNYDSDEF IDISNKTEDG IKIGENSSNA ASTVSGADQK GKKKGLPAKN LMAERRRRKK LNDRLYMLRS VVPKITKMDR ASILGDAIKY
401: LKELQQDINE LHNELESTPA NSSLSPATSF YPLTPTASAL PSRIKEELVP SSFPSPLSSP TGQPARIEVR VREGRAVNIH MICSRKPGVL LSTMKTLDSL
501: GLDIQQAVIS CFNGFVLDVF RAEQSNEGQD IHPDQIKAVL MDSAGFNGGV I

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.