Factsheet for Bra016749.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21073	Canola	nucleus	99.31	99.77
CDY34601	Canola	nucleus	89.84	87.61
Bra019794.1-P	Field mustard	nucleus	73.9	75.29
AT1G12860.1	Thale cress	nucleus	77.37	74.44
GSMUA_Achr6P08070_001	Banana	nucleus	35.8	71.1
Bra032947.1-P	Field mustard	nucleus	59.82	58.6
Bra034246.1-P	Field mustard	nucleus	56.35	58.37
Bra025226.1-P	Field mustard	nucleus	66.97	58.35
VIT_14s0068g01200.t01	Wine grape	nucleus	57.04	45.91
KRG94685	Soybean	nucleus	44.57	45.31
EES04142	Sorghum	nucleus	39.26	45.21
TraesCS3B01G476000.1	Wheat	nucleus	38.57	44.06
TraesCS3D01G434900.1	Wheat	nucleus	38.57	43.83
HORVU3Hr1G096460.5	Barley	nucleus	38.34	43.8
TraesCS3A01G442200.1	Wheat	nucleus	38.34	43.34
Os01t0928000-01	Rice	nucleus	37.88	43.04
GSMUA_Achr10P...	Banana	nucleus	50.35	42.83
KRH06841	Soybean	nucleus	44.34	42.67
KRH08406	Soybean	nucleus	41.8	40.77
Zm00001d042263_P001	Maize	nucleus	39.26	40.67
Solyc03g118310.2.1	Tomato	nucleus	45.27	37.12
PGSC0003DMT400036951	Potato	nucleus	45.03	35.39
Bra009022.1-P	Field mustard	nucleus	19.4	27.72
Bra024404.1-P	Field mustard	nucleus	22.4	27.02
Bra031852.1-P	Field mustard	nucleus	22.17	26.82
Bra002756.1-P	Field mustard	nucleus	12.7	22.36
Bra020462.1-P	Field mustard	nucleus	12.24	21.54
Bra024115.1-P	Field mustard	nucleus	11.55	20.49
Bra011152.1-P	Field mustard	nucleus	11.55	20.16
Bra006831.1-P	Field mustard	nucleus	11.32	19.92
Bra034392.1-P	Field mustard	nucleus	13.86	18.99
Bra011972.1-P	Field mustard	nucleus	13.39	18.35
Bra000495.1-P	Field mustard	nucleus	12.7	17.86
Bra002004.1-P	Field mustard	nucleus	20.55	15.7
Bra013041.1-P	Field mustard	nucleus	20.32	15.49
Bra019914.1-P	Field mustard	cytosol	12.47	12.95
Bra031723.1-P	Field mustard	cytosol	11.09	12.44

Protein Annotations

EnsemblPlants:Bra016749.1	EnsemblPlants:Bra016749.1-P	EnsemblPlantsGene:Bra016749	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002546031	UniProt:M4DJS1	MapMan:15.5.32	MapMan:26.4.3.4.1	:

Description

AT1G12860 (E=2e-129) SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA binding / transcription factor

Coordinates

chrA08:-:19803572..19805393

Molecular Weight (calculated)

48008.5 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.586

Length

433 amino acids

Sequence
(BLAST)

001: MNGNGTWLHD AGEPSQANDN DESRTWVRNT EENWFSNPQP LNPLHNNQND FRFNSGAFPS NPSENLLLLL QQEQQQQQQQ SFLTTKACMA SLLNIPTSNT
101: NNNINSNPFD ELGFSSGFLG QTNQTPLSMS FSGMSSPPDF LSSRSIPPPE NSSFTPLEFA GVANGVFENR AKVLKPLEVL ASSTSQPTLF QKRAAMRQSS
201: SSKTCNSESS SEMRRSSYEP DIDDASTGII DIISDEHNNK GKKKGMPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIDY LKELLQRIND
301: LHTELESTAP PSSSSLNPLT PTTQTLSYRV KEELCPSSSF PSPRGEQARI EVKLREGKAV NIHMFCGRRP GLLLSTMRAL DNLGLDVQQA VVSCFNGFAL
401: DVFRAEQCQE GHDVVPEQIK AVLLDTVGYT GLV

Best Arabidopsis Sequence Match ( AT1G12860.1 )
(BLAST)

001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV

Arabidopsis Description

SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.