CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98033	Canola	nucleus	34.98	80.54
CDY19416	Canola	nucleus	34.74	80.0
GSMUA_Achr6P08070_001	Banana	nucleus	40.61	79.36
KRH41065	Soybean	nucleus	21.13	64.75
KRH06841	Soybean	nucleus	68.31	64.67
CDY28529	Canola	nucleus	53.52	51.94
Bra032947.1-P	Field mustard	nucleus	53.29	51.36
Bra034246.1-P	Field mustard	nucleus	49.3	50.24
KRH54112	Soybean	nucleus	52.58	48.48
KRH63854	Soybean	nucleus	52.58	48.17
KRH08406	Soybean	nucleus	50.0	47.97
CDY48974	Canola	nucleus	53.76	47.81
KRH73107	Soybean	mitochondrion, nucleus	18.08	47.24
AT1G12860.1	Thale cress	nucleus	49.53	46.89
AT3G26744.1	Thale cress	nucleus	54.23	46.76
VIT_14s0068g01200.t01	Wine grape	nucleus	58.69	46.47
TraesCS3B01G476000.1	Wheat	nucleus	41.31	46.44
TraesCS3D01G434900.1	Wheat	nucleus	41.31	46.19
HORVU3Hr1G096460.5	Barley	nucleus	41.08	46.17
Os01t0928000-01	Rice	nucleus	41.08	45.93
Bra019794.1-P	Field mustard	nucleus	45.77	45.88
TraesCS3A01G442200.1	Wheat	nucleus	41.08	45.69
Bra025226.1-P	Field mustard	nucleus	53.29	45.67
EES04142	Sorghum	nucleus	39.91	45.21
CDY34601	Canola	nucleus	46.71	44.82
CDY21073	Canola	nucleus	45.31	44.78
Bra016749.1-P	Field mustard	nucleus	45.31	44.57
GSMUA_Achr10P...	Banana	nucleus	50.7	42.44
KRH59747	Soybean	nucleus	47.42	41.82
Zm00001d042263_P001	Maize	nucleus	40.38	41.15
Solyc03g118310.2.1	Tomato	nucleus	47.18	38.07
PGSC0003DMT400036951	Potato	nucleus	48.12	37.21
KRG99605	Soybean	cytosol	12.44	33.54
KRH45479	Soybean	nucleus	23.24	30.94
KRH39520	Soybean	nucleus	24.18	30.93
KRH74438	Soybean	nucleus	24.18	30.84
KRH62159	Soybean	nucleus	22.07	28.48
KRH52870	Soybean	nucleus	22.07	28.4
KRH16909	Soybean	nucleus	22.07	27.98
KRH16156	Soybean	nucleus	17.61	27.57
KRH72519	Soybean	nucleus	21.13	27.03
KRH37338	Soybean	nucleus	14.79	25.82
KRH12334	Soybean	nucleus	14.08	24.69
KRH19109	Soybean	nucleus	12.68	23.38
KRH26533	Soybean	nucleus	16.43	21.74
KRH22827	Soybean	nucleus	15.73	20.74
KRH30560	Soybean	nucleus	14.32	19.55
KRH25108	Soybean	nucleus	12.91	19.3
KRH02772	Soybean	nucleus	13.62	17.06
KRH36073	Soybean	nucleus	20.89	15.59
KRG90676	Soybean	extracellular, vacuole	20.19	14.9
KRH45665	Soybean	nucleus	14.79	12.7

Protein Annotations

EntrezGene:100217333	MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	EMBL:ACUP02012015	UniProt:B8XJY6
EMBL:FJ393224	EnsemblPlantsGene:GLYMA_19G102000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRG94685	ProteinID:KRG94685	ProteinID:KRG94685.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000189538E	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:34997734..35001450

Molecular Weight (calculated)

46620.6 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.461

Length

426 amino acids

Sequence
(BLAST)

001: MNMERYTLPA PPNIIPEEEE NIAIAMGAPL IPSFKSMLQQ HPQQLDSYFN SSISSTTIPF VPNMDSFLSL DPFSPSFFNN SSSSSNMALD PGFDLGLDTG
101: LHSSAPAPHL FSQAQMMGFE FSELEALAGP GNVNVPFADG AKAAALLRSP HFEPPQQQPT LYRKRRGTAA EIPGLEMVRR KGRKWQEGGG EGEEGSSADV
201: GGSGLNYESD EQNESNGLKL SENGGDNKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH HELESTPPGS
301: SLTPSSSTSF QPLTPTLPTL PCRVKEELYP GTLPSPKNQA AKVEVRVREG RTVNIHMFCT RRPGLLLSTM KALDNLGLDV QQAVISCFNG FALDVFKAEQ
401: CREGQDVLPE QIKAVLSDSA GFHGMM

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.