Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G434900.1 | Wheat | nucleus | 99.47 | 98.95 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 98.68 | 97.65 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 96.31 | 96.31 |
| CDX98033 | Canola | nucleus | 36.41 | 74.59 |
| CDY19416 | Canola | nucleus | 36.15 | 74.05 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 42.48 | 73.85 |
| Os01t0928000-01 | Rice | nucleus | 72.3 | 71.92 |
| EES04142 | Sorghum | nucleus | 70.18 | 70.74 |
| Zm00001d042263_P001 | Maize | nucleus | 70.45 | 63.88 |
| Bra034246.1-P | Field mustard | nucleus | 45.91 | 41.63 |
| KRG94685 | Soybean | nucleus | 46.44 | 41.31 |
| CDY28529 | Canola | nucleus | 46.17 | 39.86 |
| Bra032947.1-P | Field mustard | nucleus | 46.44 | 39.82 |
| AT1G12860.1 | Thale cress | nucleus | 46.44 | 39.11 |
| Bra019794.1-P | Field mustard | nucleus | 43.54 | 38.82 |
| KRH06841 | Soybean | nucleus | 45.91 | 38.67 |
| Bra016749.1-P | Field mustard | nucleus | 44.06 | 38.57 |
| CDY21073 | Canola | nucleus | 43.8 | 38.52 |
| KRH08406 | Soybean | nucleus | 44.33 | 37.84 |
| CDY34601 | Canola | nucleus | 44.06 | 37.61 |
| CDY48974 | Canola | nucleus | 46.97 | 37.16 |
| Bra025226.1-P | Field mustard | nucleus | 48.55 | 37.02 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 52.24 | 36.8 |
| AT3G26744.1 | Thale cress | nucleus | 47.76 | 36.64 |
| GSMUA_Achr10P... | Banana | nucleus | 48.28 | 35.95 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 48.55 | 34.98 |
| Solyc03g118310.2.1 | Tomato | nucleus | 46.97 | 33.71 |
| PGSC0003DMT400036951 | Potato | nucleus | 46.17 | 31.76 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 39.58 | 30.3 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 22.43 | 27.87 |
| TraesCS7B01G465400.1 | Wheat | nucleus | 24.27 | 26.44 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 22.43 | 24.5 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 18.21 | 22.62 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 13.72 | 20.31 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 14.51 | 20.07 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 14.51 | 19.78 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 13.19 | 18.87 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 20.58 | 14.1 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 12.66 | 13.99 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 20.32 | 13.92 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G476000.1 | EnsemblPlantsGene:TraesCS3B01G476000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF2 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| SUPFAM:SSF55021 | TIGR:cd00083 | TIGR:cd04873 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | : |
Description
No Description!
Coordinates
chr3B:-:724926421..724929062
Molecular Weight (calculated)
39424.9 Da
IEP (calculated)
4.802
GRAVY (calculated)
-0.147
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSAAAVGV EKEDELVGAG GGDWGYLTSE AMATAGFPAF GFPCGARGGV TPAPTSASLL MSMEHAALFD YNAAFPSSSS SAAAAPPAYH DFGSGGNPFS
101: VDAPPFLLEA PPPLTVAPGG QKGGFLAPPL SAFGDGMGWD DEDELDQQSV DASSLGVSAS LENAVVGAPG GGGGGGNGKG KKKGMPAKNL MAERRRRKKL
201: NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRISDL HSELESAPSS AALGGPSTAN SFLPSTPTLQ PFPGRIKEER CPPAPFPSPS GQQATVEVRM
301: REGQAVNIHM FCARRPGILL STMRALDSLG LDIEQAVISC FDGFAMDVFR AEQCREGPGL LPEEIKAVLL HCAGLQNAM
101: VDAPPFLLEA PPPLTVAPGG QKGGFLAPPL SAFGDGMGWD DEDELDQQSV DASSLGVSAS LENAVVGAPG GGGGGGNGKG KKKGMPAKNL MAERRRRKKL
201: NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRISDL HSELESAPSS AALGGPSTAN SFLPSTPTLQ PFPGRIKEER CPPAPFPSPS GQQATVEVRM
301: REGQAVNIHM FCARRPGILL STMRALDSLG LDIEQAVISC FDGFAMDVFR AEQCREGPGL LPEEIKAVLL HCAGLQNAM
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.