Factsheet for TraesCS7B01G211600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G308300.1	Wheat	nucleus	98.48	98.48
TraesCS7A01G311800.1	Wheat	nucleus	96.39	97.31
HORVU7Hr1G074490.3	Barley	nucleus	93.16	91.76
Zm00001d049294_P001	Maize	nucleus	70.72	71.81
Os11t0523700-01	Rice	nucleus	71.48	71.76
EES08566	Sorghum	nucleus	70.15	70.96
TraesCS4B01G051500.2	Wheat	nucleus	57.6	61.21
Zm00001d007382_P001	Maize	nucleus	56.46	57.23
KRH54112	Soybean	nucleus	44.68	50.87
KRH63854	Soybean	nucleus	43.92	49.68
TraesCS3B01G476000.1	Wheat	nucleus	34.98	48.55
PGSC0003DMT400074075	Potato	nucleus	46.2	45.85
Solyc06g068870.2.1	Tomato	nucleus	45.82	45.39
VIT_01s0244g00130.t01	Wine grape	nucleus	43.35	44.19
TraesCS4B01G331900.1	Wheat	nucleus	15.97	27.54
TraesCS7B01G465400.1	Wheat	nucleus	16.92	25.57
TraesCS4B01G332000.1	Wheat	nucleus	16.54	25.07
TraesCS3B01G070400.1	Wheat	nucleus	13.31	22.95
TraesCS2B01G289900.1	Wheat	nucleus	11.41	21.58
TraesCS2B01G289700.2	Wheat	nucleus	10.84	20.8
TraesCS4B01G364800.1	Wheat	nucleus	10.08	20.7
TraesCS3B01G018400.1	Wheat	nucleus	9.7	19.25
TraesCS6B01G095700.1	Wheat	nucleus	18.06	17.18
TraesCS6B01G095600.1	Wheat	nucleus	17.68	16.82
TraesCS2B01G298600.1	Wheat	nucleus	10.46	16.04

Protein Annotations

EnsemblPlants:TraesCS7B01G211600.1	EnsemblPlantsGene:TraesCS7B01G211600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR31945	PANTHER:PTHR31945:SF12	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	TIGR:cd04873	MapMan:15.5.32	MapMan:26.4.3.4.1	:

Description

No Description!

Coordinates

chr7B:-:387160773..387163850

Molecular Weight (calculated)

54523.6 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.304

Length

526 amino acids

Sequence
(BLAST)

001: MLSRFNNSLW MQEDDGHEQQ GLGHEQPAAM GMMPMMGQEA GHHHDQHLLA MPTRGDGGFR APSMLDEDWY FGAGAVGDGA ANGSMALVPA AMEASGSSSG
101: FGAGPQIFPL LNLGGSGPFD VSGFDLGGSG AGGGDFTAFL GAGNASNTSP VSLLPHGNAG FLGSFGGFGT APAQMTEFGG LAGFDLFDTG AGGGGGGGSG
201: SSSEGPAAPV SLTAPFSGRG KAAVLRPLEI FPPVGAQPTL FQKRALRRNA GEEDDDKKRK AAAAAEGSAL SAGCDTMLDD ADEDMGSIDA SGLNYDSEDG
301: RGVEESGRKD GKESNANSTV TGGAAAEGKG KKKGMPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLHKISDL QNELESSPSM
401: PSLPPTPTSF HPLTPTLPAL PSRVKEELCP SALPSPTGQQ PTVEVRLREG RAVNIHMLCP RRPGLVLSAM KAIEALGLDV QQAVISCFNG FALDVFKAEQ
501: CKDGPGLQPE EIKAVLLQSA GFHPAM

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.