Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G263300.2 | Wheat | nucleus | 91.11 | 92.42 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 92.73 | 91.8 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 61.21 | 57.6 |
| KRH54112 | Soybean | nucleus | 42.22 | 45.24 |
| KRH63854 | Soybean | nucleus | 42.22 | 44.95 |
| PGSC0003DMT400074075 | Potato | nucleus | 44.85 | 41.89 |
| Solyc06g068870.2.1 | Tomato | nucleus | 44.44 | 41.43 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 30.3 | 39.58 |
| VIT_01s0244g00130.t01 | Wine grape | nucleus | 40.4 | 38.76 |
| GSMUA_Achr10P... | Banana | nucleus | 8.69 | 31.39 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 6.06 | 30.0 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 17.17 | 27.87 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 18.18 | 25.94 |
| TraesCS7B01G465400.1 | Wheat | nucleus | 17.17 | 24.43 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 14.34 | 23.28 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 12.53 | 22.3 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 10.91 | 21.09 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 11.11 | 20.07 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 10.71 | 20.0 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 10.91 | 15.74 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 16.97 | 15.19 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 16.97 | 15.19 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G051500.2 | EnsemblPlantsGene:TraesCS4B01G051500 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF12 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | : | : |
Description
No Description!
Coordinates
chr4B:+:40074363..40078171
Molecular Weight (calculated)
51875.9 Da
IEP (calculated)
4.822
GRAVY (calculated)
-0.403
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSQFNSSLW VQEGDVHEHQ GLGHDQAAVM GLEAGNQHLM PMPSGGGGGF PALPMLDEVS WYFNPGAVGD AAGNGSMIPA PATMEASGSS SGFGDASQMF
101: PLLNPGVGGT GPLDVPGFNL DISGDLSAFL GAGNAPNASL LPHGNADFLG SFGGFGTAPA QTTDFGGLAG FDLVDTGAQG WSGPSSEGPA APAPQTAAFS
201: GQGNAKVLRP LENFPASGAQ PTLFQKRALR RNAGEEDGER RKRKAAEPDI ILDDADDDII SIDASGLNYD SEDGRDVEES GRKDGKESNA NSTVTGGAAA
301: EGSGKKKGMP AKNLMAERRR RKKLNDRLYA LRSVVPRISK MDRASILGDA IEYLKELTQK INVLQNELEA SPSTSSLPPT PTSFRPPTPT MPALPSRVKE
401: ELTSSPAQEP RVEVKLREGR VVNIRMMCSR RPGVVHSSLK ALEGLGLDVQ QAVISYFNDF TLDVSKAEQC KDGPGPQAEE IKAVLLQSAG FHPAA
101: PLLNPGVGGT GPLDVPGFNL DISGDLSAFL GAGNAPNASL LPHGNADFLG SFGGFGTAPA QTTDFGGLAG FDLVDTGAQG WSGPSSEGPA APAPQTAAFS
201: GQGNAKVLRP LENFPASGAQ PTLFQKRALR RNAGEEDGER RKRKAAEPDI ILDDADDDII SIDASGLNYD SEDGRDVEES GRKDGKESNA NSTVTGGAAA
301: EGSGKKKGMP AKNLMAERRR RKKLNDRLYA LRSVVPRISK MDRASILGDA IEYLKELTQK INVLQNELEA SPSTSSLPPT PTSFRPPTPT MPALPSRVKE
401: ELTSSPAQEP RVEVKLREGR VVNIRMMCSR RPGVVHSSLK ALEGLGLDVQ QAVISYFNDF TLDVSKAEQC KDGPGPQAEE IKAVLLQSAG FHPAA
001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
Arabidopsis Description
SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.