Factsheet for TraesCS4D01G051600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G263300.2	Wheat	nucleus	91.4	93.65
TraesCS4B01G051500.2	Wheat	nucleus	91.8	92.73
TraesCS7D01G308300.1	Wheat	nucleus	61.2	58.17
KRH54112	Soybean	nucleus	41.4	44.81
KRH63854	Soybean	nucleus	41.2	44.3
PGSC0003DMT400074075	Potato	nucleus	44.4	41.89
Solyc06g068870.2.1	Tomato	nucleus	44.0	41.43
TraesCS3D01G434900.1	Wheat	nucleus	30.8	40.42
VIT_01s0244g00130.t01	Wine grape	nucleus	39.8	38.57
GSMUA_Achr10P...	Banana	nucleus	8.6	31.39
CDX97028	Canola	cytosol, plastid, vacuole	6.0	30.0
TraesCS4D01G328700.1	Wheat	cytosol	7.8	26.71
TraesCS4D01G329100.1	Wheat	nucleus	18.0	25.71
TraesCS7D01G529200.1	Wheat	nucleus	17.2	25.44
TraesCS3D01G058100.1	Wheat	nucleus	15.0	25.34
TraesCS4D01G329000.2	Wheat	nucleus	17.8	25.21
TraesCS4D01G328900.1	Wheat	nucleus	17.4	25.0
TraesCS4D01G328800.1	Wheat	nucleus	17.4	24.65
TraesCS2D01G270300.1	Wheat	nucleus	12.4	22.3
TraesCS2D01G270000.2	Wheat	nucleus	11.2	20.9
TraesCS2D01G280100.1	Wheat	nucleus	10.8	15.93
TraesCS3D01G017700.1	Wheat	nucleus	11.8	15.86
TraesCS6D01G069400.1	Wheat	nucleus	17.2	15.52
TraesCS6D01G069300.1	Wheat	nucleus	17.2	15.44
TraesCS3D01G435200.1	Wheat	nucleus	9.6	15.19

Protein Annotations

EnsemblPlants:TraesCS4D01G051600.2	EnsemblPlantsGene:TraesCS4D01G051600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR31945	PANTHER:PTHR31945:SF12	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	MapMan:26.4.3.4.1	:	:

Description

No Description!

Coordinates

chr4D:+:27395151..27399693

Molecular Weight (calculated)

52490.6 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.408

Length

500 amino acids

Sequence
(BLAST)

001: MLSQFNSSLW VQEGDVHEHQ GLGHDQAALM GQEAGNDHNQ HLLPMPSGGG GGFRAPPMLD DDSWYFNPGA VGDAAGNGSM IPAPATMEAS GSSSGFGDAS
101: QMFPLLNPGV GGTGPLDVPG FDLDISGDLS AFLGAGNAPN TSLLPRGNTD FLGSFGGFGT APAQTTDFGG LAGFDLFDTG AQGWSGPSSE GPAAPAPQTA
201: PFSGQGNAKA LRPLDTFPAS GAQPTLFQKR ALRRNAGEED GGRKRKAAEP DIILDDADDD IISIDASGLI YDSEDGRGVE ESGRKDGNES NANSTVTGGA
301: TAEGNAKKKG MPAKNLMAER RRRKKLNDRL YALRSVVPRI SKMDRASILG DAIEYLKELK QKINVLQNEL EASPSASSLP PTPTSFHPLT PTTPTMPALP
401: SRVKEELASS AAQEPCVEVK LREGRVVNIR MMCSRRPGVV HSSLKALEGL GLDVQQAVIS YFNDFTLDVF KAEQCKDGPG PQPEEIKAVL LHCAGFHPAV

Best Arabidopsis Sequence Match ( AT1G12860.1 )
(BLAST)

001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV

Arabidopsis Description

SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.