Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068870.2.1 | Tomato | nucleus | 96.6 | 96.42 |
| KXG27392 | Sorghum | cytosol | 20.38 | 67.5 |
| VIT_17s0000g00330.t01 | Wine grape | nucleus | 63.4 | 61.09 |
| KRH63854 | Soybean | nucleus | 53.4 | 60.86 |
| KRH54112 | Soybean | nucleus | 52.45 | 60.17 |
| PGSC0003DMT400036951 | Potato | nucleus | 56.23 | 54.08 |
| GSMUA_Achr10P... | Banana | nucleus | 49.43 | 50.78 |
| GSMUA_Achr11P... | Banana | nucleus | 48.11 | 48.48 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 45.66 | 46.45 |
| TraesCS7D01G308300.1 | Wheat | nucleus | 46.04 | 46.39 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 45.85 | 46.2 |
| Os11t0523700-01 | Rice | nucleus | 44.53 | 45.04 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 41.32 | 44.88 |
| TraesCS4B01G051500.2 | Wheat | nucleus | 41.89 | 44.85 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 41.89 | 44.4 |
| Zm00001d049294_P001 | Maize | nucleus | 43.21 | 44.21 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 43.77 | 43.45 |
| Zm00001d007382_P001 | Maize | nucleus | 41.13 | 42.0 |
| GSMUA_Achr10P... | Banana | nucleus | 8.68 | 33.58 |
| PGSC0003DMT400026937 | Potato | nucleus | 19.43 | 31.6 |
| PGSC0003DMT400016360 | Potato | nucleus | 19.62 | 30.77 |
| PGSC0003DMT400078675 | Potato | nucleus | 18.87 | 29.85 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 11.13 | 29.21 |
| PGSC0003DMT400010463 | Potato | nucleus | 13.02 | 27.38 |
| PGSC0003DMT400005209 | Potato | nucleus | 13.21 | 27.13 |
| PGSC0003DMT400044959 | Potato | nucleus | 9.81 | 22.51 |
| PGSC0003DMT400048941 | Potato | nucleus | 11.51 | 19.55 |
| PGSC0003DMT400021165 | Potato | nucleus | 15.09 | 18.39 |
Protein Annotations
| EntrezGene:102589311 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1CT37 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG401028788 | PGSC:PGSC0003DMG401028788 | EnsemblPlants:PGSC0003DMT400074075 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296CE51 | RefSeq:XP_006365416.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
Inducer of CBF expression 2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG401028788]
Coordinates
chr6:-:50573707..50578577
Molecular Weight (calculated)
57939.9 Da
IEP (calculated)
5.146
GRAVY (calculated)
-0.547
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSRVNSMVW DMEGKQEEEK EETFTNKEDT TNGELGNKED MELGALSTFK SMLDGTDVDW YHNNMQNHTE NICFTQNFTE LAENSMFLQP VVPVDSSSSC
101: SPSSVSVFNN LDPSQVHYFL AQKAINNNPL DYGFNLGCEN GFLEAQGMGG LNKGGFLLAG GGFHDLSSQN QMGNPNLNSF TQYPSSHLPQ NSSTTGFSPL
201: GFVDGSANEN SLFLNRSKLL KPLDNFASIG AQPTLFQKRA ALRKNLANST GGSLGDFGGE IGQNSINGEG ERKRKWGNGE ELDDVSFDGC TLSYDSDDLT
301: ENVTNKVDDS VKNGGNSSNA TSTVTGGNQK GKKKGLPAKN LMAERRRRKK LNDRLYMLRS VVPRISKMDR ASILGDAIEY LKELLQKIND LHNELESTPP
401: SSSLTQTTSF YPLTPTGPAL PGRIKEELYP SSFASPLSSP TGQPARVEVK ARDGRAVNIH MFCSRRPGLL LSTMRALDNL GLDIQQAVIS CFNGFALDIF
501: RAEQCKEGQD FHPDQIKAVL LDSAGCHGMI
101: SPSSVSVFNN LDPSQVHYFL AQKAINNNPL DYGFNLGCEN GFLEAQGMGG LNKGGFLLAG GGFHDLSSQN QMGNPNLNSF TQYPSSHLPQ NSSTTGFSPL
201: GFVDGSANEN SLFLNRSKLL KPLDNFASIG AQPTLFQKRA ALRKNLANST GGSLGDFGGE IGQNSINGEG ERKRKWGNGE ELDDVSFDGC TLSYDSDDLT
301: ENVTNKVDDS VKNGGNSSNA TSTVTGGNQK GKKKGLPAKN LMAERRRRKK LNDRLYMLRS VVPRISKMDR ASILGDAIEY LKELLQKIND LHNELESTPP
401: SSSLTQTTSF YPLTPTGPAL PGRIKEELYP SSFASPLSSP TGQPARVEVK ARDGRAVNIH MFCSRRPGLL LSTMRALDNL GLDIQQAVIS CFNGFALDIF
501: RAEQCKEGQD FHPDQIKAVL LDSAGCHGMI
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.