Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08070_001 | Banana | nucleus | 35.08 | 83.03 |
| GSMUA_Achr11P... | Banana | nucleus | 71.9 | 70.53 |
| GSMUA_Achr10P... | Banana | nucleus | 56.98 | 57.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.02 | 57.7 |
| GSMUA_Achr6P08060_001 | Banana | nucleus | 41.67 | 56.73 |
| KRH54112 | Soybean | nucleus | 48.06 | 53.68 |
| KRH63854 | Soybean | nucleus | 48.26 | 53.55 |
| PGSC0003DMT400074075 | Potato | nucleus | 50.78 | 49.43 |
| Solyc06g068870.2.1 | Tomato | nucleus | 50.39 | 48.96 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 19.77 | 42.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.38 | 42.19 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 18.6 | 40.51 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 20.54 | 37.06 |
| GSMUA_Achr10P... | Banana | nucleus | 8.14 | 30.66 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 10.08 | 24.76 |
| GSMUA_Achr3P00640_001 | Banana | nucleus | 13.76 | 23.83 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 11.43 | 22.69 |
| GSMUA_Achr1P07450_001 | Banana | nucleus, plastid | 12.4 | 21.84 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 11.82 | 20.07 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 10.66 | 18.64 |
| GSMUA_Achr1P07330_001 | Banana | nucleus | 14.73 | 18.01 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr10G18380_001 | EnsemblPlants:GSMUA_Achr10P18380_001 | EnsemblPlants:GSMUA_Achr10T18380_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0RJB3 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF13 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029665EB | InterPro:bHLH_dom | SEG:seg |
Description
Putative Transcription factor ICE1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18380_001]
Coordinates
chr10:-:25113591..25117136
Molecular Weight (calculated)
54985.1 Da
IEP (calculated)
4.965
GRAVY (calculated)
-0.266
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSRIDGGFW MDDGGDDDGP VAWTRGNASS SSGGGMGEPK EDELGLSGFK SMLVDDWYVG AAAHHPFEAF QTQQDLKDVA FLPNPSPHEA LLLPPVDSLD
101: QSQPFFSSRP ALSSVFNASN HFGVGVDLRS DAPGFLPAVP VLNPPDLMNG GGGAIDGVFG FVGIGTSGQL GCPELNSASQ FSGALLLPPA ENCSVSSSGT
201: AFCPVGFDSL ENSPFLNRSK VLRPLEMFPT AGSQPTLFQK RAAAALLQNS VATAEKKERK RKGNEVDELD EGSIDGSGLH YDSDDFAGEC AKVEENAGNV
301: AGGGGNSSSA DVMVADRGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQRINDLQN ELESTPSSSS LPTTNATSLH
401: PLTPTLPTLP CRLKDELKHC SSSLPSPNSQ PARVEVKARE GRAVDIHMFC ARRPGLLLSA LRSLDSLGLD IQQAVISCFN GFALDIFQAE QCKDPGVLPE
501: EIKAVLLHSA GLLNTM
101: QSQPFFSSRP ALSSVFNASN HFGVGVDLRS DAPGFLPAVP VLNPPDLMNG GGGAIDGVFG FVGIGTSGQL GCPELNSASQ FSGALLLPPA ENCSVSSSGT
201: AFCPVGFDSL ENSPFLNRSK VLRPLEMFPT AGSQPTLFQK RAAAALLQNS VATAEKKERK RKGNEVDELD EGSIDGSGLH YDSDDFAGEC AKVEENAGNV
301: AGGGGNSSSA DVMVADRGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQRINDLQN ELESTPSSSS LPTTNATSLH
401: PLTPTLPTLP CRLKDELKHC SSSLPSPNSQ PARVEVKARE GRAVDIHMFC ARRPGLLLSA LRSLDSLGLD IQQAVISCFN GFALDIFQAE QCKDPGVLPE
501: EIKAVLLHSA GLLNTM
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.