Factsheet for GSMUA_Achr1P07330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	56.4	81.23
GSMUA_Achr3P00640_001	Banana	nucleus	29.15	41.28
PGSC0003DMT400021165	Potato	nucleus	33.89	32.87
GSMUA_Achr6P08070_001	Banana	nucleus	16.35	31.65
GSMUA_Achr10P...	Banana	nucleus	9.0	27.74
VIT_01s0127g00860.t01	Wine grape	nucleus	38.63	26.63
TraesCS6A01G071300.1	Wheat	nucleus	32.7	25.09
TraesCS6D01G069400.1	Wheat	nucleus	32.94	25.09
TraesCS6B01G095600.1	Wheat	nucleus	32.7	24.95
TraesCS6B01G095700.1	Wheat	nucleus	32.7	24.95
VIT_03s0038g02540.t01	Wine grape	nucleus	38.15	24.81
HORVU6Hr1G012730.1	Barley	nucleus	32.7	24.73
HORVU6Hr1G012760.1	Barley	nucleus	32.7	24.73
Os02t0120500-01	Rice	nucleus	32.23	24.64
TraesCS6D01G069300.1	Wheat	nucleus	32.46	24.6
GSMUA_AchrUn_...	Banana	nucleus	13.74	24.47
GSMUA_Achr7P03930_001	Banana	nucleus	13.74	24.47
TraesCS6A01G071200.1	Wheat	nucleus	31.99	24.37
Solyc08g062780.1.1	Tomato	nucleus	34.36	24.33
KRH36073	Soybean	nucleus	32.46	23.99
GSMUA_Achr1P26300_001	Banana	nucleus	13.51	23.85
GSMUA_Achr6P30900_001	Banana	nucleus	11.85	23.81
KXG29315	Sorghum	nucleus	31.75	23.47
CDY31399	Canola	nucleus	31.28	23.28
CDX89760	Canola	nucleus	31.28	23.24
Bra002004.1-P	Field mustard	nucleus	31.04	23.1
CDY02227	Canola	nucleus	31.04	23.06
CDX71316	Canola	nucleus	31.04	23.06
Bra013041.1-P	Field mustard	nucleus	31.04	23.06
AT2G16910.1	Thale cress	nucleus	30.57	22.59
GSMUA_Achr8P34120_001	Banana	nucleus	15.17	22.38
KRG90676	Soybean	extracellular, vacuole	29.86	21.84
Zm00001d053895_P001	Maize	nucleus	29.62	20.0
GSMUA_Achr7P16000_001	Banana	nucleus	11.85	19.23
GSMUA_Achr6P27600_001	Banana	nucleus	12.8	17.76
GSMUA_Achr4P12700_001	Banana	nucleus	11.85	16.95
GSMUA_Achr10P...	Banana	nucleus	18.01	14.73
GSMUA_Achr10P...	Banana	nucleus	16.82	13.95
GSMUA_Achr11P...	Banana	nucleus	17.3	13.88
GSMUA_AchrUn_...	Banana	nucleus	7.11	9.06
GSMUA_Achr6P08060_001	Banana	nucleus	8.06	8.97

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr1G07330_001	EnsemblPlants:GSMUA_Achr1P07330_001	EnsemblPlants:GSMUA_Achr1T07330_001	InterPro:HLH_DNA-bd_sf
InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0RXU1	PFAM:PF00010	PFscan:PS50888
PFscan:PS51671	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF55021
UniParc:UPI000295F9F5	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G07330_001]

Coordinates

chr1:+:5747059..5748805

Molecular Weight (calculated)

47213.6 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.821

Length

422 amino acids

Sequence
(BLAST)

001: MTDGQRTREF MMSQCTSDSY DRSIDIPMAD NNMDSGAGGG DDSQPWLAPQ AMATGAQALP WDLYASHLNL FDRTKDDDVL HDGSTRNFFL LGNLPPPLSE
101: SMVGNGFPED ALAYQQSLLT TASNLHCHNF GAESSVTREI AGHGKESLKM EGNARIESGS EGSDDDEEHR PARRSGKQHC SKNLFAERKR RKKLNDRLYA
201: LRALVPKITK MDRASILGDA IEYVMDLQKQ VKDLQDELEE TNQEDDGHDK QIGSNLRNSN SQMDVPIPNG WLDHDDSGNN PRTAAAADDN KPSSDKGQQM
301: EPQVEVRQLE ANEFFLKVLC EHKQGGFSRL LEAMSSLGLE VTNVSVTTYG SLVLNVFRVE RRDDEVVEAD RVRDSLLEVT RDPQGWSGLA QAVEYQQQHP
401: QHGHSHHELG FDHHLHYLHH QA

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.