Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08060_001 | Banana | nucleus | 75.83 | 66.23 |
| GSMUA_Achr10P... | Banana | nucleus | 57.7 | 37.02 |
| GSMUA_Achr10P... | Banana | nucleus | 54.68 | 35.56 |
| GSMUA_Achr11P... | Banana | nucleus | 56.5 | 35.55 |
| GSMUA_Achr10P... | Banana | nucleus | 8.46 | 20.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.6 | 18.99 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 12.99 | 17.99 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 11.78 | 17.89 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 12.39 | 17.3 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 12.99 | 15.04 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 7.85 | 10.0 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 5.44 | 8.57 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 7.85 | 8.55 |
| GSMUA_Achr1P07450_001 | Banana | nucleus, plastid | 7.55 | 8.53 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 7.55 | 8.47 |
| GSMUA_Achr3P00640_001 | Banana | nucleus | 7.25 | 8.05 |
| GSMUA_Achr1P07330_001 | Banana | nucleus | 9.06 | 7.11 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP14780_001 | EnsemblPlants:GSMUA_AchrUn_randomT14780_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG14780_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF13 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 |
| UniParc:UPI0002948380 | UniProt:M0U987 | MapMan:15.5.32 | : | : | : |
Description
Putative Transcription factor ICE1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14780_001]
Coordinates
chrchrUn_random:-:69580245..69581450
Molecular Weight (calculated)
35093.5 Da
IEP (calculated)
5.793
GRAVY (calculated)
-0.380
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSRIHGVVW AEDGGEEEDA ASWTRANTPS ASGEAMGESK DELGLPSFKS MLDDDWYLGG GATSNPATST AAHYPFEVFQ AHRDVAFPSN PKPHEALLLP
101: VVDDLDQSQP FFTAKSAFAS LFGAVCSNPF DAGLDLGCDA PGFLPAPQVS NTRVLMNRGG GGGGGGILGF AGMVAGEQLG CPDLSSGAEF AGSRLLLPSE
201: NCDGSISGVA VGSMGFDNFD NSPFLNRSKL LRPLEIFPPV GAQPTLFQKR AAAALRQNPA AAGKKEENEK KRKGNEDEEM DDGSGKKKGL PAKNLMAERR
301: RRKKLNDRLY MLRSVVPKIS KVKSSSPTVL C
101: VVDDLDQSQP FFTAKSAFAS LFGAVCSNPF DAGLDLGCDA PGFLPAPQVS NTRVLMNRGG GGGGGGILGF AGMVAGEQLG CPDLSSGAEF AGSRLLLPSE
201: NCDGSISGVA VGSMGFDNFD NSPFLNRSKL LRPLEIFPPV GAQPTLFQKR AAAALRQNPA AAGKKEENEK KRKGNEDEEM DDGSGKKKGL PAKNLMAERR
301: RRKKLNDRLY MLRSVVPKIS KVKSSSPTVL C
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKVNTYF VSFISLRACL LVAVIENCCV VAL
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKVNTYF VSFISLRACL LVAVIENCCV VAL
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.