Factsheet for GSMUA_Achr6P08060_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	66.23	75.83
GSMUA_Achr10P...	Banana	nucleus	56.73	41.67
GSMUA_Achr11P...	Banana	nucleus	57.26	41.25
GSMUA_Achr10P...	Banana	nucleus	52.51	39.1
GSMUA_Achr6P08070_001	Banana	nucleus	15.04	26.15
GSMUA_Achr10P...	Banana	nucleus	7.92	21.9
KRH41065	Soybean	nucleus	7.92	21.58
GSMUA_AchrUn_...	Banana	nucleus	12.14	19.41
GSMUA_Achr1P26300_001	Banana	nucleus	11.61	18.41
GSMUA_Achr7P03930_001	Banana	nucleus	10.82	17.3
GSMUA_Achr8P34120_001	Banana	nucleus	12.4	16.43
GSMUA_Achr7P16000_001	Banana	nucleus	7.65	11.15
GSMUA_Achr3P00640_001	Banana	nucleus	8.71	11.07
GSMUA_Achr6P27600_001	Banana	nucleus	8.71	10.86
GSMUA_Achr6P30900_001	Banana	nucleus	5.28	9.52
GSMUA_Achr4P12700_001	Banana	nucleus	7.39	9.49
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	6.6	8.53
GSMUA_Achr1P07330_001	Banana	nucleus	8.97	8.06

Protein Annotations

EnsemblPlants:GSMUA_Achr6P08060_001	EnsemblPlants:GSMUA_Achr6T08060_001	EnsemblPlantsGene:GSMUA_Achr6G08060_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	PFAM:PF00010	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459
UniParc:UPI0002954F15	UniProt:M0T555	MapMan:15.5.32	:	:	:

Description

Putative Transcription factor ICE1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08060_001]

Coordinates

chr6:+:5400693..5401904

Molecular Weight (calculated)

39554.9 Da

IEP (calculated)

4.599

GRAVY (calculated)

-0.480

Length

379 amino acids

Sequence
(BLAST)

001: MLSRINGVVW SEEGGDEEDA ASWTRASAPG ASGGAMGQSK DELGLPSFKS MLDDDWYLGG VAAASNALPS ADAQHPFEAF QTHQDVAFSS SAKPHEALLL
101: PPVDELDQNQ PFFPAKSALS SLFGAVCSNP FDAGLDLGCD APAFLGAPHM SHSTNLMNRS GSGGDGVLGF GGMGADDQLG CADLSPGADF SGGRLLPPSD
201: TCSGSISGGT FGPMGFDSFE NSPLLNRSKV LRPLEIFPPV GAQPTLFQKR AAAALRQNSG SALEEENEKK RNGNEDDEID DGSMDASGLN YDTDDAAGES
301: AKGEENAKDG GGGSNSMANS TVTGGGDHKG KKKGLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKVKNL TPVSSWLLP

Best Arabidopsis Sequence Match ( AT3G26744.5 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKVNTYF VSFISLRACL LVAVIENCCV VAL

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.