CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73107	Soybean	mitochondrion, nucleus	36.69	31.29
KRH59747	Soybean	nucleus	82.01	23.6
KRH54112	Soybean	nucleus	71.22	21.43
KRH63854	Soybean	nucleus	71.22	21.29
KRG94685	Soybean	nucleus	64.75	21.13
KRH06841	Soybean	nucleus	64.75	20.0
KRH08406	Soybean	nucleus	61.87	19.37
KRH37338	Soybean	nucleus	30.94	17.62
KRH19109	Soybean	nucleus	28.78	17.32
KRG99605	Soybean	cytosol	19.42	17.09
KRH12334	Soybean	nucleus	29.5	16.87
KRH45479	Soybean	nucleus	36.69	15.94
KRH39520	Soybean	nucleus	38.13	15.92
KRH74438	Soybean	nucleus	38.13	15.87
KRH62159	Soybean	nucleus	35.97	15.15
KRH52870	Soybean	nucleus	35.97	15.11
KRH16156	Soybean	nucleus	29.5	15.07
KRH16909	Soybean	nucleus	35.25	14.58
KRH72519	Soybean	nucleus	34.53	14.41
KRH26533	Soybean	nucleus	28.78	12.42
KRH22827	Soybean	nucleus	28.06	12.07
KRH02772	Soybean	nucleus	28.78	11.76
KRH30560	Soybean	nucleus	25.9	11.54
KRH25108	Soybean	nucleus	23.02	11.23
KRG90676	Soybean	extracellular, vacuole	37.41	9.01
KRH36073	Soybean	nucleus	36.69	8.93
GSMUA_Achr6P08060_001	Banana	nucleus	21.58	7.92
KRH45665	Soybean	nucleus	25.18	7.06

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02004750	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G008200	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:K7L4B1	EnsemblPlants:KRH41065	ProteinID:KRH41065	ProteinID:KRH41065.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF2	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00023C583E	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:649428..651127

Molecular Weight (calculated)

15539.7 Da

IEP (calculated)

9.612

GRAVY (calculated)

-0.440

Length

139 amino acids

Sequence
(BLAST)

001: MAERRRRKKL NDRLYMLLRS VVPNISKMDR ASILGDAIEY LKELLQRISE LRNELESTPA AGASSSFLLH PLTPTTLPTR MQEELCLSSL PSPNAQPASA
101: RVEVGLREGR GVKTSTCFAT GNPDSCPRQP WISYGYFQS

Best Arabidopsis Sequence Match ( AT3G26744.6 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEVIF YSQLKG

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.