CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36073	Soybean	nucleus	81.98	82.84
VIT_01s0127g00860.t01	Wine grape	nucleus	47.31	44.61
VIT_03s0038g02540.t01	Wine grape	nucleus	48.35	42.99
AT2G16910.1	Thale cress	nucleus	41.59	42.03
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	21.32	41.98
CDY31399	Canola	nucleus	40.73	41.45
Bra002004.1-P	Field mustard	nucleus	40.73	41.45
CDX71316	Canola	nucleus	40.55	41.2
Solyc08g062780.1.1	Tomato	nucleus	42.29	40.94
GSMUA_Achr3P00640_001	Banana	nucleus	20.97	40.6
CDY02227	Canola	nucleus	39.51	40.14
Bra013041.1-P	Field mustard	nucleus	39.51	40.14
CDX89760	Canola	nucleus	39.17	39.79
PGSC0003DMT400021165	Potato	nucleus	29.12	38.62
KRH41065	Soybean	nucleus	9.01	37.41
Os02t0120500-01	Rice	nucleus	31.54	32.97
TraesCS6B01G095600.1	Wheat	nucleus	30.68	32.01
TraesCS6A01G071300.1	Wheat	nucleus	30.5	32.0
TraesCS6D01G069400.1	Wheat	nucleus	30.5	31.77
TraesCS6D01G069300.1	Wheat	nucleus	30.5	31.6
HORVU6Hr1G012760.1	Barley	nucleus	30.33	31.36
HORVU6Hr1G012730.1	Barley	nucleus	30.33	31.36
TraesCS6B01G095700.1	Wheat	nucleus	29.98	31.28
TraesCS6A01G071200.1	Wheat	nucleus	29.64	30.87
GSMUA_Achr1P07330_001	Banana	nucleus	21.84	29.86
KXG29315	Sorghum	nucleus	29.46	29.77
KRH37338	Soybean	nucleus	12.3	29.1
KRH73107	Soybean	mitochondrion, nucleus	8.15	28.83
KRH19109	Soybean	nucleus	11.44	28.57
KRH12334	Soybean	nucleus	11.61	27.57
KRH45665	Soybean	nucleus	23.57	27.42
Zm00001d053895_P001	Maize	nucleus	29.64	27.36
KRH39520	Soybean	nucleus	13.86	24.02
KRH16156	Soybean	nucleus	11.27	23.9
KRH62159	Soybean	nucleus	13.52	23.64
KRH74438	Soybean	nucleus	13.52	23.35
KRH45479	Soybean	nucleus	12.82	23.12
KRH52870	Soybean	nucleus	12.65	22.05
KRH72519	Soybean	nucleus	12.65	21.92
KRH16909	Soybean	nucleus	12.65	21.73
KRH02772	Soybean	nucleus	12.48	21.18
KRH08406	Soybean	nucleus	15.94	20.72
KRH22827	Soybean	nucleus	11.44	20.43
KRG94685	Soybean	nucleus	14.9	20.19
KRH54112	Soybean	nucleus	16.12	20.13
KRH63854	Soybean	nucleus	16.12	20.0
KRH06841	Soybean	nucleus	15.6	20.0
KRH26533	Soybean	nucleus	11.09	19.88
KRH30560	Soybean	nucleus	10.23	18.91
KRH59747	Soybean	nucleus	15.77	18.84
KRH25108	Soybean	nucleus	9.19	18.6
KRG99605	Soybean	cytosol	5.03	18.35

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0R0ELN4	EMBL:ACUP02012633	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G107500
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRG90676	ProteinID:KRG90676	ProteinID:KRG90676.1	InterPro:MYC/MYB_N	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00023DC36F	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:35010609..35013883

Molecular Weight (calculated)

65591.5 Da

IEP (calculated)

4.929

GRAVY (calculated)

-0.673

Length

577 amino acids

Sequence
(BLAST)

001: MDISFCFFCF FWSVFSSILL LLLVKGSNHS HFAFVSSKRK FHYHHPGDMN IIMQNLVERL RPLVGLNGWD YCIYWKLSED QRFLEWLGCC CAGTESNQNA
101: GEEHIFPVSS VASCRDSTYP HPRTKPCDLL SQLSTSIPID NSGIHAQTLL TNQPNWVNYS NGMDPNILEE TIGTQVLISV PGGLVELFVT KQVPEDHQLI
201: DYVINQCIEA VNHSMSFHID ENSMSNMQSN PLIGDENEGN NNSRDTSTLQ NMSSQWTSAV LQTNQEDQEH EHEHDTYQKS LMTTTDSQYV EPLEAKEKQE
301: EDKDLLKNVV GRSDSMSDCS DQNEEEEDGK YRRRNGKGNQ SKNLVAERKR RKKLNDRLYN LRSLVPRISK LDRASILGDA IEYVKDLQKQ VKELQDELEE
401: NADTESNCMN CVSELGPNAE HDKAQTGLHV GTSGNGYVSK QKQEGTTVID KQTQQMEPQV EVALIDGNEY FVKVFCEHRP DGFVKLMEAL NTIGMDVVHA
501: TVTSHTGLVS NVFKVEKKDS ETVEAEDVRD SLLELMRNRY RGWTHEMTAT SGNSVESDQH QLHNHNQMGA YPHEFHS

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.