Factsheet for PGSC0003DMT400021165

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062780.1.1	Tomato	nucleus	94.48	68.96
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	28.97	43.0
GSMUA_Achr3P00640_001	Banana	nucleus	24.83	36.24
VIT_01s0127g00860.t01	Wine grape	nucleus	48.51	34.48
GSMUA_Achr1P07330_001	Banana	nucleus	32.87	33.89
VIT_03s0038g02540.t01	Wine grape	nucleus	47.13	31.59
KRH36073	Soybean	nucleus	41.15	31.35
AT2G16910.1	Thale cress	nucleus	40.0	30.47
Bra002004.1-P	Field mustard	nucleus	38.85	29.81
CDY31399	Canola	nucleus	38.62	29.63
CDX71316	Canola	nucleus	38.62	29.58
KRG90676	Soybean	extracellular, vacuole	38.62	29.12
CDX89760	Canola	nucleus	37.47	28.7
Bra013041.1-P	Field mustard	nucleus	37.01	28.35
CDY02227	Canola	nucleus	37.01	28.35
Os02t0120500-01	Rice	nucleus	31.03	24.46
TraesCS6A01G071300.1	Wheat	nucleus	29.89	23.64
TraesCS6B01G095600.1	Wheat	nucleus	29.66	23.33
HORVU6Hr1G012760.1	Barley	nucleus	29.66	23.12
HORVU6Hr1G012730.1	Barley	nucleus	29.66	23.12
TraesCS6D01G069400.1	Wheat	nucleus	29.43	23.1
TraesCS6D01G069300.1	Wheat	nucleus	29.43	22.98
TraesCS6B01G095700.1	Wheat	nucleus	29.2	22.97
TraesCS6A01G071200.1	Wheat	nucleus	28.97	22.74
KXG29315	Sorghum	nucleus	29.43	22.42
PGSC0003DMT400010463	Potato	nucleus	12.87	22.22
Zm00001d053895_P001	Maize	nucleus	29.89	20.8
PGSC0003DMT400078675	Potato	nucleus	15.63	20.3
PGSC0003DMT400044959	Potato	nucleus	10.57	19.91
PGSC0003DMT400016360	Potato	nucleus	15.4	19.82
PGSC0003DMT400026937	Potato	nucleus	14.25	19.02
PGSC0003DMT400005209	Potato	nucleus	10.8	18.22
PGSC0003DMT400048941	Potato	nucleus	12.41	17.31
PGSC0003DMT400074075	Potato	nucleus	18.39	15.09
PGSC0003DMT400036951	Potato	nucleus	17.01	13.43

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000978	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555
GO:GO:0009791	GO:GO:0009908	GO:GO:0046983	GO:GO:0048658	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M1AEQ0	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400008195	PGSC:PGSC0003DMG400008195	EnsemblPlants:PGSC0003DMT400021165
PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029672AC
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Transcription factor ABORTED MICROSPORES [Source:PGSC_GENE;Acc:PGSC0003DMG400008195]

Coordinates

chr8:+:34989518..34992438

Molecular Weight (calculated)

49382.4 Da

IEP (calculated)

6.318

GRAVY (calculated)

-1.224

Length

435 amino acids

Sequence
(BLAST)

001: MMNSTFSNGV QENTSKPFPT EGDGDGDGDD HIKDSQNHYQ QTVSPAATSD HLSYEFPLKR KQLDTCSMNF LPPFSTYSTP EVDNNTGGNM LFNQSTSDAT
101: HFSENRYMSE MDAYLQKQMM RSSSTQAGID DESVKHDNGR SNSGSDSDQN EEEDDPKYRR RNGKGPQSKN LMAERKRRKK LNERLYALRA LVPKISKLDR
201: ASILGDAIEY VMELEKQVKD LQLELEEHSD DDGGGRNPDQ IHPVVLSHNG TKNRPKSENG KLTNGTHREI STNSNGSADP SRKNQEVEEN DKLQQMEPQV
301: EVAQLDGNEF FVKVFREHKA GGFVRTLEAL NSLGLEVTNV NATRHTCLVS SIFKVEKRDN EMVQADHVRD TLLELTRNPS RGWSEMGRAS SDNNNNNNAN
401: GTTDYHQHQH HDHHLDNNNQ HKQTNSHHFH RHHHH

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.