Factsheet for PGSC0003DMT400048941

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400048941
PGSC0003DMT400076759
PGSC0003DMT400076775

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28160.1	PGSC0003DMT400048941	AT2G28160.1	18268542
AT2G28160.1	PGSC0003DMT400076759	AT3G56970.1	18268542
AT2G28160.1	PGSC0003DMT400076775	AT3G56970.1	18268542
AT2G28160.1	PGSC0003DMT400076759	AT3G56980.1	18268542
AT2G28160.1	PGSC0003DMT400076775	AT3G56980.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051550.2.1	Tomato	cytosol	91.67	94.08
VIT_06s0061g00720.t01	Wine grape	nucleus	53.21	52.87
AT2G28160.1	Thale cress	nucleus	48.72	47.8
CDY31199	Canola	nucleus	46.47	46.33
Bra000495.1-P	Field mustard	nucleus	45.51	46.1
CDX83286	Canola	nucleus	45.83	45.69
CDY04543	Canola	nucleus	45.83	45.25
CDX71377	Canola	nucleus	45.83	45.25
Bra011972.1-P	Field mustard	nucleus	45.51	44.94
KRH22827	Soybean	nucleus	46.47	44.89
Bra034392.1-P	Field mustard	nucleus	44.23	43.67
CDY30505	Canola	nucleus	43.91	43.63
KRH26533	Soybean	nucleus	44.87	43.48
CDX77160	Canola	nucleus	43.91	43.35
KRH25108	Soybean	nucleus	38.14	41.75
KRH30560	Soybean	nucleus	41.67	41.67
GSMUA_Achr6P27600_001	Banana	nucleus	31.73	32.57
HORVU2Hr1G068960.2	Barley	nucleus	28.85	29.41
TraesCS2A01G281200.1	Wheat	nucleus	30.45	28.11
TraesCS2D01G280100.1	Wheat	nucleus	30.45	28.02
TraesCS2B01G298600.1	Wheat	nucleus	30.77	27.99
Zm00001d004007_P001	Maize	nucleus	31.73	27.65
KXG26070	Sorghum	nucleus	32.37	27.6
Os04t0381700-00	Rice	nucleus	31.09	27.56
Zm00001d025205_P001	Maize	nucleus	32.37	26.51
PGSC0003DMT400044959	Potato	nucleus	18.59	25.11
PGSC0003DMT400010463	Potato	nucleus	18.59	23.02
PGSC0003DMT400026937	Potato	nucleus	17.63	16.87
PGSC0003DMT400005209	Potato	nucleus	13.46	16.28
PGSC0003DMT400016360	Potato	nucleus	17.31	15.98
PGSC0003DMT400078675	Potato	nucleus	16.99	15.82
PGSC0003DMT400021165	Potato	nucleus	17.31	12.41
PGSC0003DMT400074075	Potato	nucleus	19.55	11.51
PGSC0003DMT400036951	Potato	nucleus	19.23	10.89

Protein Annotations

EntrezGene:102601425	MapMan:15.5.32	MapMan:25.4.1.5	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0009719
GO:GO:0009987	GO:GO:0010039	GO:GO:0034756	GO:GO:0046983	GO:GO:0071281	GO:GO:0071369
GO:GO:0071732	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BN25	PFAM:PF00010
EnsemblPlantsGene:PGSC0003DMG400019017	PGSC:PGSC0003DMG400019017	EnsemblPlants:PGSC0003DMT400048941	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF17
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000294E683	RefSeq:XP_006338844.1	InterPro:bHLH_dom	SEG:seg

Description

BHLH transcriptional regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400019017]

Coordinates

chr6:+:26664801..26666904

Molecular Weight (calculated)

35243.4 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.437

Length

312 amino acids

Sequence
(BLAST)

001: MESGNASMEN NVNDIGLINF LDEDNFEQFI ELIRGETADP IVKFCPNYDC EHITGCFSAA NAQFEPTSMD FYDTTLPDPI SLYTSFPGEI KLDDDDDDEE
101: EEEDCDESSG TTATTKMTPT TKGTRTDRSR TLISERKRRG RMKEKLYALR SLVPNITKMD KASIIGDAIL YVQGLQTKAK KLKVEIAEFE SSINQSGLFQ
201: NAKKMNFTSY YPAIKRITKM DINQVEEKGF YVRLICNKGR QIAASLFKAL ESLTGFNVQT SNLATSTNDY IFTFTLNVRE CHEVDINFGN LKLWIASAFL
301: NQGFDFETSS LV

Best Arabidopsis Sequence Match ( AT2G28160.1 )
(BLAST)

001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT

Arabidopsis Description

FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.