Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034392.1-P | Field mustard | nucleus | 99.37 | 99.37 |
| CDY30505 | Canola | nucleus | 98.42 | 99.04 |
| AT2G28160.1 | Thale cress | nucleus | 86.08 | 85.53 |
| CDY04543 | Canola | nucleus | 84.18 | 84.18 |
| CDX71377 | Canola | nucleus | 82.59 | 82.59 |
| CDY31199 | Canola | nucleus | 80.7 | 81.47 |
| CDX83286 | Canola | nucleus | 80.38 | 81.15 |
| KRH22827 | Soybean | nucleus | 52.85 | 51.7 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 49.05 | 49.36 |
| KRH25108 | Soybean | nucleus | 44.3 | 49.12 |
| KRH26533 | Soybean | nucleus | 49.37 | 48.45 |
| KRH30560 | Soybean | nucleus | 47.15 | 47.76 |
| Solyc06g051550.2.1 | Tomato | cytosol | 43.04 | 44.74 |
| PGSC0003DMT400048941 | Potato | nucleus | 43.35 | 43.91 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 29.43 | 30.59 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 26.58 | 27.45 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 28.8 | 26.92 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 28.48 | 26.55 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 28.8 | 26.53 |
| CDX98033 | Canola | nucleus | 15.51 | 26.49 |
| KXG26070 | Sorghum | nucleus | 30.38 | 26.23 |
| Zm00001d004007_P001 | Maize | nucleus | 29.43 | 25.98 |
| CDY19416 | Canola | nucleus | 15.19 | 25.95 |
| CDY43542 | Canola | nucleus | 21.52 | 25.86 |
| CDY42237 | Canola | nucleus | 19.62 | 25.62 |
| CDY38270 | Canola | nucleus | 19.94 | 25.61 |
| Os04t0381700-00 | Rice | nucleus | 28.48 | 25.57 |
| CDY30182 | Canola | nucleus | 19.62 | 25.41 |
| CDY47924 | Canola | nucleus | 19.62 | 25.2 |
| CDX68608 | Canola | nucleus | 20.89 | 25.1 |
| CDY46719 | Canola | nucleus | 20.89 | 25.0 |
| CDX88610 | Canola | nucleus | 19.3 | 24.8 |
| Zm00001d025205_P001 | Maize | nucleus | 29.43 | 24.41 |
| CDY11882 | Canola | nucleus | 18.99 | 24.39 |
| CDY52738 | Canola | cytosol | 12.34 | 23.64 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 9.81 | 19.62 |
| CDX97027 | Canola | nucleus | 17.72 | 18.79 |
| CDX69821 | Canola | nucleus | 17.72 | 18.48 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 5.06 | 16.0 |
| CDY69978 | Canola | nucleus | 18.04 | 15.92 |
| CDY37835 | Canola | nucleus | 17.72 | 15.64 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 9.81 | 15.35 |
| CDY08769 | Canola | nucleus | 17.09 | 15.04 |
| CDY21073 | Canola | nucleus | 18.99 | 13.92 |
| CDY34601 | Canola | nucleus | 18.99 | 13.51 |
| CDY54227 | Canola | nucleus | 16.14 | 13.42 |
| CDY28529 | Canola | nucleus | 18.35 | 13.21 |
| CDY34878 | Canola | cytosol | 15.51 | 12.76 |
| CDX93399 | Canola | nucleus | 16.46 | 12.68 |
| CDY37964 | Canola | nucleus | 16.14 | 12.56 |
| CDY31399 | Canola | nucleus | 22.15 | 12.35 |
| CDX71316 | Canola | nucleus | 22.15 | 12.32 |
| CDY02227 | Canola | nucleus | 21.52 | 11.97 |
| CDX89760 | Canola | nucleus | 21.52 | 11.97 |
| CDY48974 | Canola | nucleus | 18.04 | 11.9 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.5 | Gene3D:4.10.280.10 | GO:A0A078CJV0 | EnsemblPlants:CDX77160 | ProteinID:CDX77160 |
| ProteinID:CDX77160.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00127778001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEAF0C | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g39550D
Coordinates
chrLK031809:+:1553920..1555589
Molecular Weight (calculated)
35223.2 Da
IEP (calculated)
4.516
GRAVY (calculated)
-0.518
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRVNALSN LNDLEVYNFL VDPNFDQFIN FIRGDDQAIE NPPLDFDLGG RPLQNNSCFI DQNQFVPTPV VDLFNELPDL GSNVTESFHS FEGESVKPGG
101: DDDDYNDGDD SSATTTNNDG SRKTKTDRSR TLISERRRRS RMKDKLYALR SLVPNITKMD KASIVGDAVL YVQELQSQAK KLKADIAGLE ASLNSTGGYQ
201: EPAPDARTTQ TFQSIKSPSK NIIEMDVIQV EEKGFYVRLV CNKGVGVAPS LYKSLESLRS FQVQNSNLSS PSPDRYLLTY ALDGTCFEQS LNLPNLKLWI
301: TGSLLNQGFE FLKPFT
101: DDDDYNDGDD SSATTTNNDG SRKTKTDRSR TLISERRRRS RMKDKLYALR SLVPNITKMD KASIVGDAVL YVQELQSQAK KLKADIAGLE ASLNSTGGYQ
201: EPAPDARTTQ TFQSIKSPSK NIIEMDVIQV EEKGFYVRLV CNKGVGVAPS LYKSLESLRS FQVQNSNLSS PSPDRYLLTY ALDGTCFEQS LNLPNLKLWI
301: TGSLLNQGFE FLKPFT
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.