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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014971.1-P Field mustard cytosol, nucleus, plastid 99.59 99.59
CDX85121 Canola nucleus 95.12 95.12
CDY71388 Canola cytosol 80.49 78.88
CDY06148 Canola nucleus 78.46 77.51
CDY71118 Canola nucleus 77.64 77.02
CDX77490 Canola nucleus 77.24 76.61
CDY06149 Canola nucleus 77.24 76.31
CDX72086 Canola nucleus 73.17 76.27
CDX72085 Canola nucleus 75.2 73.71
CDY06147 Canola nucleus 73.17 71.71
CDX67670 Canola nucleus 71.14 70.28
CDX67671 Canola nucleus 71.14 70.28
CDX76026 Canola nucleus 70.73 70.16
CDY68089 Canola nucleus 71.54 70.12
CDY69684 Canola nucleus 70.73 69.32
CDY47395 Canola nucleus 62.2 69.23
CDY47394 Canola nucleus 71.14 68.63
CDX76025 Canola nucleus 71.14 68.36
CDY47392 Canola nucleus 71.14 68.36
AT3G56980.1 Thale cress nucleus 71.54 68.22
CDX76031 Canola nucleus 68.7 67.33
CDX76023 Canola cytosol 6.5 57.14
CDX76027 Canola nucleus 51.22 54.78
CDY06938 Canola nucleus 50.0 51.68
CDY47396 Canola mitochondrion 61.79 51.53
CDY14758 Canola nucleus 49.59 51.26
CDX76032 Canola cytosol 46.34 50.89
CDY72354 Canola nucleus 49.19 49.79
CDX97997 Canola nucleus 49.19 49.79
CDY23861 Canola cytosol, plastid 27.64 48.57
KRG95137 Soybean cytosol, nucleus, plastid 18.29 38.46
VIT_13s0047g00450.t01 Wine grape nucleus 34.96 38.22
VIT_08s0007g05300.t01 Wine grape nucleus 36.99 37.14
PGSC0003DMT400076759 Potato nucleus 25.61 35.0
KRH66812 Soybean cytosol, nucleus, plastid 34.15 34.85
KRH66814 Soybean nucleus 34.15 34.85
VIT_13s0073g00400.t01 Wine grape extracellular, golgi, nucleus 33.74 34.44
Solyc10g079680.1.1 Tomato nucleus 25.61 32.64
GSMUA_Achr8P22120_001 Banana nucleus 30.08 30.83
Zm00001d011847_P001 Maize nucleus 28.46 30.57
Solyc10g079650.1.1 Tomato nucleus 30.89 30.4
GSMUA_AchrUn_... Banana nucleus 30.49 30.36
Zm00001d042062_P001 Maize nucleus 27.24 30.18
TraesCS3B01G549700.1 Wheat nucleus 25.61 30.14
PGSC0003DMT400076775 Potato cytosol 12.6 29.52
TraesCS2B01G543700.1 Wheat nucleus 28.46 28.69
KXG34133 Sorghum nucleus 28.05 28.28
TraesCS3B01G550200.2 Wheat nucleus 28.05 27.94
TraesCS3D01G495400.1 Wheat nucleus 26.83 27.73
TraesCS2A01G515300.1 Wheat nucleus 28.46 27.67
TraesCS2B01G543800.1 Wheat nucleus 28.05 27.6
TraesCS3A01G489400.1 Wheat nucleus 26.02 27.59
TraesCS3D01G495700.1 Wheat nucleus 27.64 27.53
TraesCS3B01G549800.1 Wheat nucleus 26.42 27.31
TraesCS2D01G517000.1 Wheat nucleus 28.05 27.27
HORVU2Hr1G114070.1 Barley nucleus 28.05 27.27
HORVU3Hr1G108660.1 Barley nucleus 25.61 27.16
TraesCS3A01G489700.1 Wheat nucleus 27.24 27.13
TraesCS3D01G495300.1 Wheat nucleus 25.61 26.92
TraesCS3A01G489500.1 Wheat nucleus 26.02 26.89
HORVU3Hr1G108680.1 Barley nucleus 26.83 26.83
HORVU3Hr1G108670.2 Barley nucleus 26.02 26.67
Os01t0952800-01 Rice nucleus 26.42 26.32
TraesCS3D01G495600.1 Wheat nucleus 26.02 26.12
TraesCS3A01G489600.1 Wheat nucleus 26.02 26.12
TraesCS7B01G321400.1 Wheat nucleus 26.42 26.1
TraesCS3B01G550000.1 Wheat nucleus 25.61 25.71
TraesCS7A01G421000.1 Wheat nucleus 26.02 25.2
CDX80905 Canola nucleus 32.11 20.31
Solyc10g079660.1.1 Tomato nucleus 34.55 12.2
Protein Annotations
MapMan:15.5.32MapMan:25.4.1.6MapMan:25.5.1.3Gene3D:4.10.280.10GO:A0A078CN82EnsemblPlants:CDX77489
ProteinID:CDX77489ProteinID:CDX77489.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006357GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00128359001InterPro:HLH_DNA-bd_sfInterPro:IPR011598
InterPro:IPR036638InterPro:MASH1/Ascl1a-likePFAM:PF00010PFscan:PS50888PANTHER:PTHR13935PANTHER:PTHR13935:SF41
SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EF4464InterPro:bHLH_domSEG:seg:
Description
BnaA07g06270D
Coordinates
chrLK031811:+:1141054..1141937
Molecular Weight (calculated)
27991.4 Da
IEP (calculated)
8.675
GRAVY (calculated)
-0.474
Length
246 amino acids
Sequence
(BLAST)
001: MHALGPPLFP NCGWVSRGEY ESYNLIGDNH KIGTFLDFPV PKTYGVVHHQ TSLGVSVSSE GNGINNNSVV IKKLNHNANE RNRRKKTNSL FSSLRSCLPS
101: SDEPKKLSIP QTISRSVQYI PELQEEVKKL IQKKEDLLLR ESGQRERYAK PEPKVAASYF STVFATKLRD NEVMIQISSS NIRNFSIYNV LSGLEKDGFV
201: LVDVSSSSSR REQLFCTLHL QVDKIDNYKL ICEELSQRIL YLYEEC
Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.